Mission

Our central task is the management and coordination of the plant phenotyping infrastructure at IPK, in cooperation with internal and external partners we therefore contribute to the elucidation of plant growth and its plasticity under diverse environmental conditions. We work closely with the Research Group Bioinformatics and Information Technology (BIT) to implement a data management system for standardised documentation, sustainable storage and dissemination of phenomics datasets according to FAIR principles.

The focus of our own research is predominantly to study the plant response to abiotic stress, especially drought and heat. As this response is very environment-dependent dynamic, we use precision phenotyping systems that allow non-invasive observation under controlled environmental conditions. Our focus is on genetics and physiology and also on modelling plant growth and water use (Fig. 1). Plant materials are mainly plant genetic resources of cereals and legumes, which represent a valuable source for improving the stress tolerance of modern varieties via breeding approaches for the necessary adaptation to the ongoing climate change.

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Projects

Within the German Plant Phenotyping Network (DPPN), we are expanding the existing infrastructure for plant phenotyping and making it available to users from research and industry within the framework of collaborative projects and transnational access projects (EPPN2020).

STARGATE

Within the scope of STARGATE we will support our partner in Portugal (UCP) to become an established centre of excellence on the use of sensors, multi-omics and plant phenotyping technologies.

BRACE

In BRACE we are studying mechanisms of sustainability under abiotic stresses in the first wild barley multi-parental nested association mapping (NAM) population (HEB-25) using modern automated phenotyping approaches.

BOLERO

Root development of coffee and cocoa plants is the focus of BOLERO, where we use automatic phenotyping to investigate the dynamics of root development and the response to different nutrient supply.

INCREASE

In the frame of INCREASE we are contributing to foster agricultural biodiversity in Europe by evaluating growth and drought tolerance of 200 genetic resources of chickpea via precision phenotyping and by conducting a citizen science experiment across Europe with 1,000 genetic resources of common bean. For three years, citizens throughout Europe have been called upon to participate in the bean diversity experiment. The IPK invited 100 German participants to a Citizens' Day at the institute on July 21, 2023.


Citizen Science Day 2023

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Staff

Name
Telephone
Email
OrcID
Scientists
Lauterberg, Madita Maria
Pinninti, Kalyan
Tschiersch, Dr. Henning
Scientific guests / Fellowship
Aryal, Rashmi
Kondwakwenda, Dr. Aleck
Musari, Evan
Lab Technicians
Berge, Annett
Hellmann, Marie-Cheyenne
Kriegel, Heiko
Kurenkov, Konstantin
Muecke, Ingo
Wilkerling, Danny

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Publications

Author
Title
2024

Bienert M D, Junker A, Melzer M, Altmann T, von Wirén N, Bienert G P:

Boron deficiency responses in maize (Zea mays L.) roots. J. Plant Nutr. Soil Sci. (2024) Epub ahead of print. https://doi.org/10.1002/jpln.202300173

Cortinovis G, Vincenzi L, Anderson R, Marturano G, Marsh J I, Bayer P E, Rocchetti L, Frascarelli G, Lanzavecchia G, Pieri A, Benazzo A, Bellucci E, Di Vittori V, Nanni L, Ferreira Fernández J J, Rossato M, Aguilar O M, Morrell P L, Rodriguez M, Gioia T, Neumann K, Alvarez Diaz J C, Gratias A, Klopp C, Bitocchi E, Geffroy V, Delledonne M, Edwards D, Papa R:

Adaptive gene loss in the common bean pan-genome during range expansion and domestication. Nat. Commun. 15 (2024) 6698. https://dx.doi.org/10.1038/s41467-024-51032-2

de Celis M, Fernandéz-Alonso M J, Belda I, García C, Ochoa-Hueso R, Palomino J, Singh B K, Yin Y, Wang J-T, Abdala-Roberts L, Alfaro F D, Angulo-Pérez D, Arthikala M-K, Corwin J, Gui-Lan D, Hernandez-Lopez A, Nanjareddy K, Pasari B, Quijano-Medina T, Rivera D S, Shaaf S, Trivedi P, Yang Q, Zaady E, Zhu Y-G, Delgado-Baquerizo M, Milla R, García-Palacios P:

The abundant fraction of soil microbiomes regulates the rhizosphere function in crop wild progenitors. Ecol. Lett. 27 (2024) e14462. https://dx.doi.org/10.1111/ele.14462

Heuermann M C, Meyer R C, Knoch D, Tschiersch H, Altmann T:

Strong prevalence of light regime-specific QTL in Arabidopsis detected using automated high-throughput phenotyping in fluctuating or constant light. Physiol. Plant. 176 (2024) e14255. https://dx.doi.org/10.1111/ppl.14255

Lauterberg M, Tschiersch H, Zhao Y, Kuhlmann M, Mücke I, Papa R, Bitocchi E, Neumann K:

Implementation of theoretical non-photochemical quenching (NPQ((T))) to investigate NPQ of chickpea under drought stress with High-throughput Phenotyping. Sci. Rep. 14 (2024) 13970. https://dx.doi.org/10.1038/s41598-024-63372-6

Ullah S, Panzarová K, Trtílek M, Lexa M, Máčala V, Neumann K, Altmann T, Hejátko J, Pernisová M, Gladilin E:

High-throughput spike detection in greenhouse cultivated grain crops with attention mechanisms-based deep learning models. Plant Phenomics 6 (2024) 0155. https://dx.doi.org/10.34133/plantphenomics.0155

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