Berkner M O, Jiang Y, Reif J C, Schulthess A W:

Trait-customized sampling of core collections from a winter wheat genebank collection supports association studies. Front. Plant Sci. 15 (2024) 1451749. https://dx.doi.org/10.3389/fpls.2024.1451749

Berkner M O, Weise S, Reif J C, Schulthess A W:

Genomic prediction reveals unexplored variation in grain protein and lysine content across a vast winter wheat genebank collection. Front. Plant Sci. 14 (2024) 1270298. https://dx.doi.org/10.3389/fpls.2023.1270298

Cavalet-Giorsa E, González-Muñoz A, Athiyannan N, Holden S, Salhi A, Gardener C, Quiroz-Chávez J, Rustamova S M, Elkot A F, Patpour M, Rasheed A, Mao L, Lagudah E S, Periyannan S K, Sharon A, Himmelbach A, Reif J C, Knauft M, Mascher M, Stein N, Chayut N, Ghosh S, Perovic D, Putra A, Perera A B, Hu C-Y, Yu G, Ahmed H I, Laquai K D, Rivera L F, Chen R, Wang Y, Gao X, Liu S, Raupp W J, Olson E L, Lee J-Y, Chhuneja P, Kaur S, Zhang P, Park R F, Ding Y, Liu D-C, Li W, Nasyrova F Y, Dvorak J, Abbasi M, Li M, Kumar N, Meyer W B, Boshoff W H P, Steffenson B J, Matny O, Sharma P K, Tiwari V K, Grewal S, Pozniak C J, Chawla H S, Ens J, Dunning L T, Kolmer J A, Lazo G R, Xu S S, Gu Y Q, Xu X, Uauy C, Abrouk M, Bougouffa S, Brar G S, Wulff B B H, Krattinger S G:

Origin and evolution of the bread wheat D genome. Nature 633 (2024) 848-855. https://dx.doi.org/10.1038/s41586-024-07808-z

Chen G, Stepanenko A, Borisjuk N:

Contrasting patterns of 5S rDNA repeats in European and Asian ecotypes of greater duckweed, Spirodela polyrhiza (Lemnaceae). Front. Plant Sci. 15 (2024) 1378683. https://dx.doi.org/10.3389/fpls.2024.1378683

Dong Y, Li G, Zhang X, Feng Z, Li T, Li Z, Xu S, Xu S, Liu W, Xue J:

Genome-wide association study for maize hybrid performance in a typical breeder population. Int. J. Mol. Sci. 25 (2024) 1190. https://dx.doi.org/10.3390/ijms25021190

Golan G, Weiner J, Zhao Y, Schnurbusch T:

Agroecological genetics of biomass allocation in wheat uncovers genotype interactions with canopy shade and plant size. New Phytol. 242 (2024) 107-120. https://dx.doi.org/10.1111/nph.19576

He X, Wang D, Jiang Y, Li M, Delgado-Baquerizo M, McLaughlin C, Marcon C, Guo L, Baer M, Moya Y A T, von Wirén N, Deichmann M, Schaaf G, Piepho H-P, Yang Z, Yang J, Yim B, Smalla K, Goormachtig S, de Vries F T, Hüging H, Baer M, Sawers R J H, Reif J C, Hochholdinger F, Chen X, Yu P:

Heritable microbiome variation is correlated with source environment in locally adapted maize varieties. Nat. Plants 10 (2024) 598–617. https://dx.doi.org/10.1038/s41477-024-01654-7

Huang Y, Maurer A, Giehl R F H, Zhao S, Golan G, Thirulogachandar V, Li G, Zhao Y, Trautewig C, Himmelbach A, Börner A, Jayakodi M, Stein N, Mascher M, Pillen K, Schnurbusch T:

Dynamic phytomeric growth contributes to local adaptation in barley. Mol. Biol. Evol. 41 (2024) msae011. https://dx.doi.org/10.1093/molbev/msae011

Lauterberg M, Tschiersch H, Zhao Y, Kuhlmann M, Mücke I, Papa R, Bitocchi E, Neumann K:

Implementation of theoretical non-photochemical quenching (NPQ((T))) to investigate NPQ of chickpea under drought stress with High-throughput Phenotyping. Sci. Rep. 14 (2024) 13970. https://dx.doi.org/10.1038/s41598-024-63372-6

Lell M, Zhao Y, Reif J C:

Leveraging the potential of big genomic and phenotypic data for genome-wide association mapping in wheat. Crop J. 12 (2024) 803-813. https://doi.org/10.1016/j.cj.2024.03.005

Paril J, Reif J, Fournier-Level A, Pourkheirandish M:

Heterosis in crop improvement. Plant J. 117 (2024) 23-32. https://dx.doi.org/10.1111/tpj.16488

Rembe M:

The use of genome-wide prediction to increase efficiency in plant breeding programs. (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät III Agrar- und Ernährungswissenschaften, Geowissenschaften und Informatik (2024)

Schmidt C, Hinterberger V, Philipp N, Reif J C, Schnurbusch T:

Hybrid grain production in wheat benefits from synchronized flowering and high female flower receptivity. J. Exp. Bot. (2024) accepted. https://dx.doi.org/10.1093/jxb/erae430

Schneider J, Hinterberger V, Spiller M, Moittié T, Gils M, Wolf M, Reif J C, Schulthess A W:

First insights into the quantitative genetic composition of the female seed yield for an efficient hybrid seed production in wheat (Triticum aestivum L.). Plant Breed. 143 (2024) 131-141. https://dx.doi.org/10.1111/pbr.13160

Svoboda P, Holubec V, Reif J C, Berkner M O:

Curation of historical phenotypic wheat data from the Czech Genebank for research and breeding. Sci. Data 11 (2024) 763. https://dx.doi.org/10.1038/s41597-024-03598-1

Yuan Z, Rembe M, Mascher M, Stein N, Jayakodi M, Börner A, Oldach K, Jahoor A, Jensen J D, Rudloff J, Dohrendorf V-E, Kuhfus L P, Dyrszka E, Conte M, Hinz F, Trouchaud S, Reif J C, El Hanafi S:

Capitalizing genebank core collections for rare and novel disease resistance loci to enhance barley resilience. J. Exp. Bot. 75 (2024) 5940–5954. https://dx.doi.org/10.1093/jxb/erae283

El Hanafi S, Jiang Y, Kehel Z, Schulthess A W, Zhao Y, Mascher M, Haupt M, Himmelbach A, Stein N, Amri A, Reif J C:

Genomic predictions to leverage phenotypic data across genebanks. Front. Plant Sci. 14 (2023) 1227656. https://dx.doi.org/10.3389/fpls.2023.1227656

Fernández-Calleja M, Boutin C, Dyrszka E, Manès Y, Reif J C, Zhao Y, Aparicio N, Ciudad F J, Casas A M, Igartua E:

Identification of adapted breeding lines to improve barley hybrids for Spain. Crop Sci. 63 (2023) 186-203. https://doi.org/10.1002/csc2.20858

Gogna A, Zhang J, Jiang Y, Schulthess A W, Zhao Y, Reif J C:

Filtering for SNPs with high selective constraint augments mid-parent heterosis predictions in wheat (Triticum aestivum L.). Crop J. 11 (2023) 166-176. https://dx.doi.org/10.1016/j.cj.2022.06.009

Hinterberger V, Douchkov D, Lueck S, Reif J C, Schulthess A W:

High-throughput imaging of powdery mildew resistance of the winter wheat collection hosted at the German Federal ex situ Genebank for Agricultural and Horticultural Crops. GigaScience 12 (2023) giad007. https://dx.doi.org/10.1093/gigascience/giad007

Khodaeiaminjan M, Knoch D, Ndella Thiaw M R, Marchetti C F, Kořínková N, Techer A, Nguyen T D, Chu J, Bertholomey V, Doridant I, Gantet P, Graner A, Neumann K, Bergougnoux V:

Genome-wide association study in two-row spring barley landraces identifies QTL associated with plantlets root system architecture traits in well-watered and osmotic stress conditions. Front. Plant Sci. 14 (2023) 1125672. https://dx.doi.org/10.3389/fpls.2023.1125672

Kishchenko O, Stepanenko A, Straub T, Zhou Y, Neuhäuser B, Borisjuk N:

Ammonium uptake, mediated by ammonium transporters, mitigates manganese toxicity in Duckweed, Spirodela polyrhiza. Plants 12 (2023) 208. https://dx.doi.org/10.3390/plants12010208

Li Y-H, Qin C, Wang L, Jiao C, Hong H, Tian Y, Li Y, Xing G, Wang J, Gu Y, Gao X, Li D, Li H, Liu Z, Jing X, Feng B, Zhao T, Guan R, Guo Y, Liu J, Yan Z, Zhang L, Ge T, Li X, Wang X, Qiu H, Zhang W, Luan X, Han Y, Han D, Chang R, Guo Y, Reif J C, Jackson S A, Liu B, Tian S, Qiu L-J:

Genome-wide signatures of the geographic expansion and breeding of soybean. Sci. China Life Sci. 66 (2023) 350-365. https://dx.doi.org/10.1007/s11427-022-2158-7

Meyer R C, Weigelt-Fischer K, Tschiersch H, Topali G, Altschmied L, Heuermann M C, Knoch D, Kuhlmann M, Zhao Y, Altmann T:

Dynamic growth QTL action in diverse light environments - characterization of light regime-specific and stable QTL in Arabidopsis. J. Exp. Bot. 74 (2023) 5341–5362. https://dx.doi.org/10.1093/jxb/erad222

Muqaddasi Q H, Muqaddasi R K, Ebmeyer E, Korzun V, Argillier O, Mirdita V, Reif J C, Ganal M W, Röder M S:

Genetic control and prospects of predictive breeding for European winter wheats Zeleny sedimentation values and Hagberg-Perten falling number. Theor. Appl. Genet. 136 (2023) 229. https://dx.doi.org/10.1007/s00122-023-04450-7

Neumann K, Schulthess A W, Bassi F M, Dhanagond S, Khlestkina E, Börner A, Graner A, Kilian B:

Genomic approaches to using diversity for the adaptation of modern varieties of wheat and barley to climate change. In: Ghamkhar K, Williams W, Brown A H D (Eds.): Plant Genetic Resources for the 21st Century. The OMICS Era. New York: Apple Academic Press (2023) ISBN 9781774910825, 47-78. https://dx.doi.org/10.1201/9781003302957

Rahmani M-S, Naghavi M-R, Bushehri A-A S, Shabanian N, Otto L-G:

Phenotyping and genotyping of Pistacia atlantica Desf. subsp. kurdica along an environmental gradient in the semi-arid forests of western and southern Iran. Tree Genet. Genomes 19 (2023) 46. https://dx.doi.org/10.1007/s11295-023-01621-x

Słomińska-Durdasiak K M:

Host-induced gene silencing as resistance strategy against pathogens. (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät III Agrar- und Ernährungswissenschaften, Geowissenschaften und Informatik (2023) 135 pp.

Specka X, Martini D, Weiland C, Arend D, Asseng S, Boehm F, Feike T, Fluck J, Gackstetter D, Gonzales-Mellado A, Hartmann T, Haunert J-H, Hoedt F, Hoffmann C, König P, Lange M, Lesch S, Lindstädt B, Lischeid G, Möller M, Rascher U, Reif J C, Schmalzl M, Senft M, Stahl U, Svoboda N, Usadel B, Webber H, Ewert F:

FAIRagro: Ein Konsortium in der Nationalen Forschungsdateninfrastruktur (NFDI) für Forschungsdaten in der Agrosystemforschung. Informatik Spektrum 46 (2023) 24-35. https://dx.doi.org/10.1007/s00287-022-01520-w

Tian Y, Li D, Wang X, Zhang H, Wang J, Yu L, Guo C, Luan X, Liu X, Li H, Reif J C, Li Y-H, Qiu L-J:

Deciphering the genetic basis of resistance to soybean cyst nematode combining IBD and association mapping. Theor. Appl. Genet. 136 (2023) 50. https://dx.doi.org/10.1007/s00122-023-04268-3

Varshney R K, Stein N, Reif J:

Professor Andreas Graner: driven by the quest to unlock crop plant genomes for conservation and utilization of germplasm for breeding. Plant Biotechnol. J. 21 (2023) 2426-2432. https://dx.doi.org/10.1111/pbi.14143

Würschum T, Zhu X, Zhao Y, Jiang Y, Reif J C, Maurer H P:

Maximization through optimization? On the relationship between hybrid performance and parental genetic distance. Theor. Appl. Genet. 136 (2023) 186. https://dx.doi.org/10.1007/s00122-023-04436-5

Zhou Y, Stepanenko A, Kishchenko O, Xu J, Borisjuk N:

Duckweeds for phytoremediation of polluted water. Plants 12 (2023) 589. https://dx.doi.org/10.3390/plants12030589

Aiyesa L V:

Unravelling the genetics of pod stringiness and agronomic traits of common bean (Phaseolus vulgaris L.) using genome-wide association studies and genotyping-by-sequencing. (Master Thesis) Göttingen, Georg-August-Universität Göttingen, Fakultät für Agrarwissenschaften (2022) 55 pp.

Arndt L:

Ein populationsbasierter Selektions- und Rückkreuzungsansatz ermöglicht es, wertvolle Variation für die Offenblütigkeit aus pflanzengenetischen Ressourcen zu erschließen. (Master Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät III Agrar- und Ernährungswissenschaften, Geowissenschaften und Informatik (2022)

Berkner M O, Schulthess A W, Zhao Y, Jiang Y, Oppermann M, Reif J C:

Choosing the right tool: Leveraging of plant genetic resources in wheat (Triticum aestivum L.) benefits from selection of a suitable genomic prediction model. Theor. Appl. Genet. 135 (2022) 4391-4407. https://dx.doi.org/10.1007/s00122-022-04227-4

Beukert U:

Genetic architecture of leaf rust and stripe rust resistance in European wheat. (PhD Thesis, kumulativ) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät III Agrar- und Ernährungswissenschaften, Geowissenschaften und Informatik (2022) 81 pp.

Buerstmayr H, Dreccer M F, Miladinović D, Qiu L, Rajcan I, Reif J, Varshney R K, Vollmann J:

Editorial: Plant breeding for increased sustainability: challenges, opportunities and progress. Theor. Appl. Genet. 135 (2022) 3679-3683. https://dx.doi.org/10.1007/s00122-022-04238-1

Fu J, Hao Y, Li H, Reif J C, Chen S, Huang C, Wang G, Li X, Xu Y, Li L:

Integration of genomic selection with doubled-haploid evaluation in hybrid breeding: From GS 1.0 to GS 4.0 and beyond. Mol. Plant 15 (2022) 577-580. https://dx.doi.org/10.1016/j.molp.2022.02.005

Gogna A, Schulthess A W, Röder M S, Ganal M W, Reif J C:

Gabi wheat a panel of European elite lines as central stock for wheat genetic research. Sci. Data 9 (2022) 538. https://dx.doi.org/10.1038/s41597-022-01651-5

Grüneberg W J, de Boeck B, Diaz F, Eyzaguirre R, Low J W, Reif J C, Campos H:

Heterosis and responses to selection in orange fleshed sweetpotato (Ipomoea batatas L.) improved using reciprocal recurrent selection. Front. Plant Sci. 13 (2022) 793904. https://dx.doi.org/10.3389/fpls.2022.793904

Hinterberger V, Douchkov D, Lück S, Kale S, Mascher M, Stein N, Reif J C, Schulthess A W:

Mining for new sources of resistance to powdery mildew in genetic resources of winter wheat. Front. Plant Sci. 13 (2022) 836723. https://dx.doi.org/10.3389/fpls.2022.836723

Hussain B, Akpınar B A, Alaux M, Algharib A M, Sehgal D, Ali Z, Aradottir G I, Batley J, Bellec A, Bentley A R, Cagirici H B, Cattivelli L, Choulet F, Cockram J, Desiderio F, Devaux P, Dogramaci M, Dorado G, Dreisigacker S, Edwards D, El-Hassouni K, Eversole K, Fahima T, Figueroa M, Gálvez S, Gill K S, Govta L, Gul A, Hensel G, Hernandez P, Crespo-Herrera L A, Ibrahim A, Kilian B, Korzun V, Krugman T, Li Y, Liu S, Mahmoud A F, Morgounov A, Muslu T, Naseer F, Ordon F, Paux E, Perovic D, Reddy G V P, Reif J C, Reynolds M, Roychowdhury R, Rudd J, Sen T Z, Sukumaran S, Ozdemir B S, Tiwari V K, Ullah N, Unver T, Yazar S, Appels R, Budak H:

Capturing wheat phenotypes at the genome level. Front. Plant Sci. 13 (2022) 851079. https://dx.doi.org/10.3389/fpls.2022.851079

Kale S M, Schulthess A W, Padmarasu S, Boeven P H G, Schacht J, Himmelbach A, Steuernagel B, Wulff B B H, Reif J C, Stein N, Mascher M:

A catalogue of resistance gene homologs and a chromosome-scale reference sequence support resistance gene mapping in winter wheat. Plant Biotechnol. J. 20 (2022) 1730-1742. https://dx.doi.org/10.1111/pbi.13843

Kamal R, Muqaddasi Q H, Zhao Y, Schnurbusch T:

Spikelet abortion in six-rowed barley is mainly influenced by final spikelet number with potential spikelet number acting as a suppressor trait. J. Exp. Bot. 73 (2022) 2005–2020. https://dx.doi.org/10.1093/jxb/erab529

Langridge P, Alaux M, Almeida N F, Ammar K, Baum M, Bekkaoui F, Bentley A R, Beres B L, Berger B, Braun H-J, Brown-Guedira G, Burt C J, Caccamo M J, Cattivelli L, Charmet G, Civáň P, Cloutier S, Cohan J-P, Devaux P J, Doohan F M, Dreccer M F, Ferrahi M, Germán S E, Goodwin S B, Griffiths S, Guzmán C, Handa H, Hawkesford M J, He Z, Huttner E, Ikeda T M, Kilian B, King I P, King J, Kirkegaard J A, Lage J, Le Gouis J, Mondal S, Mullins E, Ordon F, Ortiz-Monasterio J I, Özkan H, Öztürk İ, Pereyra S A, Pozniak C J, Quesneville H, Quincke M C, Rebetzke G J, Reif J C, Saavedra-Bravo T, Schurr U, Sharma S, Singh S K, Singh R P, Snape J W, Tadesse W, Tsujimoto H, Tuberosa R, Willis T G, Zhang X:

Meeting the challenges facing wheat production: the strategic research agenda of the global wheat Initiative. Agronomy 12 (2022) 2767. https://dx.doi.org/10.3390/agronomy12112767

Li Y-F, Li Y-H, Su S-S, Reif J C, Qi Z-M, Wang X-B, Wang X, Tian Y, Li D-L, Sun R-J, Liu Z-X, Xu Z-J, Fu G-H, Ji Y-L, Chen Q-S, Liu J-Q, Qiu L-J:

The SoySNP618K array: A high-resolution SNP platform as a valuable genomic resource for soybean genetics and breeding. J. Integr. Plant. Biol. 64 (2022) 632-648. https://dx.doi.org/10.1111/jipb.13202

Martin U:

Die Eignung von pflanzengenetischen Ressourcen für die Steigerung der Variation der Offenblütigkeit bei Weizen. (Bachelor Thesis) Bernburg, Hochschule Anhalt, Fachbereich Landwirtschaft, Ökotrophologie und Landschaftsentwicklung (2022)

Rembe M, Zhao Y, Wendler N, Oldach K, Korzun V, Reif J C:

The potential of genome-wide prediction to support parental selection, evaluated with data from a commercial barley breeding program. Plants 11 (2022) 2564. https://dx.doi.org/10.3390/plants11192564

Schulthess A W, Kale S M, Liu F, Zhao Y, Philipp N, Rembe M, Jiang Y, Beukert U, Serfling A, Himmelbach A, Fuchs J, Oppermann M, Weise S, Boeven P H G, Schacht J, Longin C F H, Kollers S, Pfeiffer N, Korzun V, Lange M, Scholz U, Stein N, Mascher M, Reif J C:

Genomics-informed prebreeding unlocks the diversity in genebanks for wheat improvement. Nat. Genet. 54 (2022) 1544-1552. https://dx.doi.org/10.1038/s41588-022-01189-7

Schulthess A W, Kale S M, Zhao Y, Gogna A, Rembe M, Philipp N, Liu F, Beukert U, Serfling A, Himmelbach A, Oppermann M, Weise S, Boeven P H G, Schacht J, Longin C F H, Kollers S, Pfeiffer N, Korzun V, Fiebig A, Schüler D, Lange M, Scholz U, Stein N, Mascher M, Reif J C:

Large-scale genotyping and phenotyping of a worldwide winter wheat genebank for its use in pre-breeding. Sci. Data 9 (2022) 784. https://dx.doi.org/10.1038/s41597-022-01891-5

Schwarzwälder L, Thorwarth P, Zhao Y, Reif J C, Longin C F H:

Hybrid wheat: quantitative genetic parameters and heterosis for quality and rheological traits as well as baking volume. Theor. Appl. Genet. 135 (2022) 1131-1141. https://dx.doi.org/10.1007/s00122-022-04039-6

Špíšek Z, Otto L-G, Vašut R J:

Genotypic variability of Sorbus domestica in Central Europe revealed by the SSR markers. Plant Biosyst. 156 (2022) 938-946. https://dx.doi.org/10.1080/11263504.2021.1984999

Wäsch C:

Impact of male floral traits on seed set in hybrid wheat production. (Master Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät III Agrar- und Ernährungswissenschaften, Geowissenschaften und Informatik (2022)

Beukert U, Pfeiffer N, Ebmeyer E, Hinterberger V, Lueck S, Serfling A, Ordon F, Schulthess A W, Reif J C:

Efficiency of a seedling phenotyping strategy to support European wheat breeding focusing on leaf rust resistance. Biology 10 (2021) 628. https://dx.doi.org/10.3390/biology10070628

Chen S, Liu F, Wu W, Jiang Y, Zhan K:

A SNP-based GWAS and functional haplotype-based GWAS of flag leaf-related traits and their influence on the yield of bread wheat (Triticum aestivum L.). Theor. Appl. Genet. 134 (2021) 3895–3909. https://dx.doi.org/10.1007/s00122-021-03935-7

González M Y:

Populating a biodigital resource center for barley (Hordeum sp.) using historical records and genomic prediction. (PhD Thesis, kumulativ) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät III Agrar- und Ernährungswissenschaften, Geowissenschaften und Informatik (2021) 43 pp.

Gonzalez M Y, Zhao Y, Jiang Y, Stein N, Habekuss A, Reif J C, Schulthess A W:

Genomic prediction models trained with historical records enable populating the German ex situ genebank bio-digital resource center of barley (Hordeum sp.) with information on resistances to soilborne barley mosaic viruses. Theor. Appl. Genet. 134 (2021) 2181–2196. https://dx.doi.org/10.1007/s00122-021-03815-0

He S, Jiang Y, Thistlethwaite R, Hayden M J, Trethowan R, Daetwyler H D:

Improving selection efficiency of crop breeding with genomic prediction aided sparse phenotyping. Front. Plant Sci. 12 (2021) 735285. https://dx.doi.org/10.3389/fpls.2021.735285

Hu D, Zhao Y, Shen J, He X, Zhang Y, Jiang Y, Snowdon R, Meng J, Reif J C, Zou J:

Genome-wide prediction for hybrids between parents with distinguished difference on exotic introgressions in Brassica napus. Crop J. 9 (2021) 1169-1178. https://doi.org/10.1016/j.cj.2020.11.002

Jiang Y, Weise S, Graner A, Reif J C:

Using genome-wide predictions to assess the phenotypic variation of a barley (Hordeum sp.) gene bank collection for important agronomic traits and passport information. Front. Plant Sci. 11 (2021) 604781. https://dx.doi.org/10.3389/fpls.2020.604781

Jiao W-B, Patel V, Klasen J, Liu F, Pecinkova P, Ferrand M, Gy I, Camilleri C, Effgen S, Koornneef M, Pecinka A, Loudet O, Schneeberger K:

The evolutionary dynamics of genetic incompatibilities introduced by duplicated genes in Arabidopsis thaliana. Mol. Biol. Evol. 38 (2021) 1225-1240. https://dx.doi.org/10.1093/molbev/msaa306

Lell M, Reif J, Zhao Y:

Optimizing the setup of multienvironmental hybrid wheat yield trials for boosting the selection capability. Plant Genome 14 (2021) e20150. https://dx.doi.org/10.1002/tpg2.20150

Li D, Zhou Z, Lu X, Jiang Y, Li G, Li J, Wang H, Chen S, Li X, Würschum T, Reif J C, Xu S, Li M, Liu W:

Genetic dissection of hybrid performance and heterosis for yield-related traits in maize. Front. Plant Sci. 12 (2021) 774478. https://dx.doi.org/10.3389/fpls.2021.774478

Liu F:

Haplotype-based association mapping complements SNP-based approaches as a powerful tool to analyze the genetic basis of complex traits. (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät III Agrar- und Ernährungswissenschaften, Geowissenschaften und Informatik (2021) 48 pp.

Meyer R C, Weigelt-Fischer K, Knoch D, Heuermann M, Zhao Y, Altmann T:

Temporal dynamics of QTL effects on vegetative growth in Arabidopsis thaliana. J. Exp. Bot. 72 (2021) 476–490. https://dx.doi.org/10.1093/jxb/eraa490

Muqaddasi Q H, Kamal R, Mirdita V, Rodemann B, Ganal M W, Reif J C, Röder M S:

Genome-wide association studies and prediction of tan spot (Pyrenophoratritici-repentis) infection in European winter wheat via different marker platforms. Genes 12 (2021) 490. https://dx.doi.org/10.3390/genes12040490

Otto L-G, Sonnenschein M, Faehnrich B, Franz C, Ruzicka J, Novak J, Fraust B, He S, Himmelbach A, Plocharski B, Bubner U, Albrecht S, Plescher A, Sharbel T:

Entwicklung einer sterilen Kamillensorte zur Erweiterung der Anbaufläche in Deutschland. J. Kulturpfl. 73 (2021) 173-174.

Rembe M, Reif J C, Ebmeyer E, Thorwarth P, Korzun V, Schacht J, Boeven P H G, Varenne P, Kazman E, Philipp N, Kollers S, Pfeiffer N, Longin C F H, Hartwig N, Gils M, Zhao Y:

Reciprocal recurrent genomic selection is impacted by genotype-by-environment interactions. Front. Plant Sci. 12 (2021) 703419. https://dx.doi.org/10.3389/fpls.2021.703419

Saxena R K, Jiang Y, Khan A W, Zhao Y, Kumar Singh V, Bohra A, Sonappa M, Rathore A, Kumar C V S, Saxena K, Reif J, Varshney R K:

Characterization of heterosis and genomic prediction-based establishment of heterotic patterns for developing better hybrids in pigeonpea. Plant Genome 14 (2021) e20125. https://dx.doi.org/10.1002/tpg2.20125

Schneider J, Berkner M O, Philipp N, Schulthess A W, Reif J C:

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Introducing beneficial alleles from plant genetic resources into the wheat germplasm. Biology 10 (2021) 982. https://dx.doi.org/10.3390/biology10100982

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Genomics and breeding innovations for enhancing genetic gain for climate resilience and nutrition traits. Theor. Appl. Genet. 134 (2021) 1829-1843. https://dx.doi.org/10.1007/s00122-021-03847-6

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QTL mapping of qSCN3-1 for resistance to soybean cyst nematode in soybean line Zhongpin 03-5373. Crop J. 9 (2021) 351-359. https://doi.org/10.1016/j.cj.2020.08.003

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On the use of GBLUP and its extension for GWAS with additive and epistatic effects. G3 Genes Genom. Genet. 11 (2021) jkab122. https://dx.doi.org/10.1093/g3journal/jkab122

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Unlocking big data doubled the accuracy in predicting the grain yield in hybrid wheat. Sci. Adv. 7 (2021) eabf9106. https://dx.doi.org/10.1126/sciadv.abf9106

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The potential of hybrid breeding to enhance leaf rust and stripe rust resistance in wheat. Theor. Appl. Genet. 133 (2020) 2171-2181. https://dx.doi.org/10.1007/s00122-020-03588-y

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Comparing the potential of marker-assisted selection and genomic prediction for improving rust resistance in hybrid wheat. Front. Plant Sci. 11 (2020) 594113. https://dx.doi.org/10.3389/fpls.2020.594113

Boeven P H G, Zhao Y, Thorwarth P, Liu F, Maurer H P, Gils M, Schachschneider R, Schacht J, Ebmeyer E, Kazman E, Mirdita V, Dörnte J, Kontowski S, Horbach R, Cöster H, Holzapfel J, Jacobi A, Ramgraber L, Reinbrecht C, Starck N, Varenne P, Starke A, Schürmann F, Ganal M, Polley A, Hartung J, Beier S, Scholz U, Longin C F H, Reif J C, Jiang Y, Würschum T:

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Genetic structure and variation in Iranian licorice (Glycyrrhiza glabra L.) populations based on morphological, phytochemical and simple sequence repeats markers. Ind. Crops Prod. 145 (2020) 112140. https://doi.org/10.1016/j.indcrop.2020.112140

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Toward pollen sterility in German chamomile (Matricaria chamomilla) – Conventional breeding approaches of cytoplasmic/genic male sterility and chemical emasculation. Plant Breed. 139 (2020) 1299-1309. https://dx.doi.org/10.1111/pbr.12859

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Chromosome-scale genome assembly for the duckweed Spirodela intermedia, integrating cytogenetic maps, PacBio and Oxford Nanopore libraries. Sci. Rep. 10 (2020) 19230. https://dx.doi.org/10.1038/s41598-020-75728-9

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Efficient algorithms for calculating epistatic genomic relationship matrices. Genetics 216 (2020) 651-669. https://dx.doi.org/10.1534/genetics.120.303459

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Genome-wide prediction in a hybrid maize population adapted to Northwest China. Crop J. 8 (2020) 830-842. https://doi.org/10.1016/j.cj.2020.04.006

Li Y H, Li D, Jiao Y Q, Schnable J C, Li Y F, Li H H, Chen H Z, Hong H L, Zhang T, Liu B, Liu Z X, You Q B, Tian Y, Guo Y, Guan R X, Zhang L J, Chang R Z, Zhang Z, Reif J, Zhou X A, Schnable P S, Qiu L J:

Identification of loci controlling adaptation in Chinese soybean landraces via a combination of conventional and bioclimatic GWAS. Plant Biotechnol. J. 18 (2020) 389-401. https://dx.doi.org/10.1111/pbi.13206

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Haplotype-based genome-wide association increases the predictability of leaf rust (Puccinia triticina) resistance in wheat. J. Exp. Bot. 71 (2020) 6958-6968. https://dx.doi.org/10.1093/jxb/eraa387

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Exome association analysis sheds light onto leaf rust (Puccinia triticina) resistance genes currently used in wheat breeding (Triticum aestivum L.). Plant Biotechnol. J. 18 (2020) 1396-1408. https://dx.doi.org/10.1111/pbi.13303

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Comparative analysis of epigenetic inhibitors reveals different degrees of interference with transcriptional gene silencing and induction of DNA damage. Plant J. 102 (2020) 68-84. https://dx.doi.org/10.1111/tpj.14612

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Genomes of the Venus flytrap and close relatives unveil the roots of plant carnivory. Curr. Biol. 30 (2020) 2312-2320. https://dx.doi.org/10.1016/j.cub.2020.04.051

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Enabling reusability of plant phenomic datasets with MIAPPE 1.1. New Phytol. 227 (2020) 260-273. https://dx.doi.org/10.1111/nph.16544

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Activating ex situ genebank collections of wheat and barley for breading and research. (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät III Agrar- und Ernährungswissenschaften, Geowissenschaften und Informatik (2020)

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Identification of novel genetic factors underlying the host-pathogen interaction between barley (Hordeum vulgare L.) and powdery mildew (Blumeria graminis f. sp. hordei). PLoS One 15 (2020) e0235565. https://dx.doi.org/10.1371/journal.pone.0235565

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Die Eignung von Elitelinien für die Hybridsaatgutproduktion und als Tester in Kreuzungen mit pflanzengenetischen Ressourcen. (Master Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät III Agrar- und Ernährungswissenschaften, Geowissenschaften und Informatik (2020) 56 pp.

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Association mapping of wheat Fusarium head blight resistance-related regions using a candidate-gene approach and their verification in a biparental population. Theor. Appl. Genet. 133 (2020) 341–351. https://dx.doi.org/10.1007/s00122-019-03463-5

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Auswahl von doppelten haploiden Linien aus der Kreuzung Piko mal Hermann für weitere Studien zur Identifizierung exzellenter Bestäubungslinien in der Hybridweizenzüchtung. (Master Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät III Agrar- und Ernährungswissenschaften, Geowissenschaften und Informatik (2020) 50 pp.

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Analysis of the outcrossing ratio of German chamomile (Matricaria recutita L.) using SSR-markers. (Master Thesis) Saskatoon, SK, Canada, University of Saskatchewan, Department of Plant Sciences (2020) 81 pp.

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Non-invasive phenotyping reveals genomic regions involved in pre-anthesis drought tolerance and recovery in spring barley. Front. Plant Sci. 10 (2019) 1307. https://dx.doi.org/10.3389/fpls.2019.01307

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Auxin application in interploidy crosses and genome stability: across-generation investigations on German chamomile (Matricaria recutita [L.] Rauschert) of various origins. Euphytica 215 (2019) 16. https://dx.doi.org/10.1007/s10681-019-2335-3

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Untersuchungen zur Vitalität und Lagerfähigkeit von Kamillepollen (Matricaria recutita L.). (Bachelor Thesis) Hannover, Gottfried Wilhelm Leibniz Universität Hannover, Institut für Gartenbauliche Produktionssysteme Abteilung Gehölz- und Vermehrungsphysiologie (2019) 32 pp.

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Search for new genetic diversity for resistance to powdery mildew (Blumeria graminis) in genetic resources of winter wheat (Triticum aestivum L.). (Master Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät III Agrar- und Ernährungswissenschaften, Geowissenschaften und Informatik (2019) 45 pp.

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Combination of various sequencing, assembly and mapping approaches, creating a reliable genome assembly for emerging aquatic crops. GIT Laboratory J. 23 (2019) 14-17.

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Comparative cytology and cytogenomics for representative species of the five duckweed genera. (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät III Agrar- und Ernährungswissenschaften, Geowissenschaften und Informatik (2019) 99 pp.

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Selecting closely-linked SNPs based on local epistatic effects for haplotype construction improves power of association mapping. G3-Genes Genom. Genet. 9 (2019) 4115-4126. https://dx.doi.org/10.1534/g3.119.400451

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Genebank genomics bridges the gap between the conservation of crop diversity and plant breeding. Nat. Genet. 51 (2019) 1076-1081. https://dx.doi.org/10.1038/s41588-019-0443-6

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Genetic dissection of agronomic and quality traits based on association mapping and genomic selection approaches in durum wheat grown in Southern Spain. PLoS One 14 (2019) e0211718. https://dx.doi.org/10.1371/journal.pone.0211718

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Genebank genomics highlights the diversity of a global barley collection. Nat. Genet. 51 (2019) 319-326. https://doi.org/10.1038/s41588-018-0266-x

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Genetic mapping reveals large-effect QTL for anther extrusion in CIMMYT spring wheat. Agronomy 9 (2019) 407. https://dx.doi.org/10.3390/agronomy9070407

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Genome-wide association mapping and prediction of adult stage Septoria tritici blotch infection in European winter wheat via high-density marker arrays. Plant Genome 12 (2019) 180029. https://dx.doi.org/10.3835/plantgenome2018.05.0029

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The influence of female receptivity on hybrid wheat breeding. (Master Thesis) Berlin, Freie Universität Berlin (2019) 55 pp.

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Dissecting the genetics underlying the relationship between protein content and grain yield in a large hybrid wheat population. Theor. Appl. Genet. 132 (2019) 489–500. https://dx.doi.org/10.1007/s00122-018-3236-x

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Deep genotyping of the gene GmSNAP facilitates pyramiding resistance to cyst nematode in soybean. Crop J. 7 (2019) 677-684. https://doi.org/10.1016/j.cj.2019.04.003

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Unlocking historical phenotypic data from an ex situ collection to enhance the informed utilization of genetic resources of barley (Hordeum sp.). Theor. Appl. Genet. 131 (2018) 2009-2019. https://dx.doi.org/10.1007/s00122-018-3129-z

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Genome-wide association analyses of plant growth traits during the stem elongation phase in wheat. Plant Biotechnol. J. 16 (2018) 2042-2052. https://dx.doi.org/10.1111/pbi.12937

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Manipulation and prediction of spike morphology traits for the improvement of grain yield in wheat. Sci. Rep. 8 (2018) 14435. https://dx.doi.org/10.1038/s41598-018-31977-3

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Quantitative genetic analysis of metabolite profiles in wheat inbred lines and hybrids. (Master Thesis) Hannover, Gottfried Wilhelm Leibniz Universität Hannover (2018) 66 pp.

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Generating a high-confidence reference genome map of the Greater Duckweed by integration of cytogenomic, optical mapping and Oxford Nanopore technologies. Plant J. 96 (2018) 670-684. https://dx.doi.org/10.1111/tpj.14049

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Haplotype-based genome-wide prediction models exploit local epistatic interactions among markers. G3 Genes Genom. Genet. 8 (2018) 1687-1699. https://dx.doi.org/10.1534/g3.117.300548

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Identification of QTL hot spots for malting quality in two elite breeding lines with distinct tolerance to abiotic stress. BMC Plant Biol. 18 (2018) 106. https://dx.doi.org/10.1186/s12870-018-1323-4

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Genome-wide prediction of hybrid performance and yield stability analysis in winter wheat. (PhD Thesis, kumulativ) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät III Agrar- und Ernährungswissenschaften, Geowissenschaften und Informatik (2018) 48 pp.

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Grain number and grain yield distribution along the spike remain stable despite breeding for high yield in winter wheat. PLoS One 13 (2018) e0205452. https://dx.doi.org/10.1371/journal.pone.0205452

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Evaluating the benefits and limitations of multiple-trait breeding assisted by genomics in cereal crops. (PhD Thesis, kumulativ) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Institut für Agrar- und Ernährungswissenschaften der Naturwissenschaftlichen Fakultät III (2018) 48 pp.

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Advantages and limitations of multiple-trait genomic prediction for Fusarium head blight severity in hybrid wheat (Triticum aestivum L.). Theor. Appl. Genet. 131 (2018) 685–701. https://dx.doi.org/10.1007/s00122-017-3029-7

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Higher grain yield and higher grain protein deviation underline the potential of hybrid wheat for a sustainable agriculture. Plant Breed. 137 (2018) 326-337. https://dx.doi.org/10.1111/pbr.12588

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Modelling epistasis in genomic selection. Genetics 201 (2015) 759-768. https://dx.doi.org/10.1534/genetics.115.177907

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Targeted association mapping demonstrating the complex molecular genetics of fatty acid formation in soybean. BMC Genomics 16 (2015) 841. https://dx.doi.org/10.1186/s12864-015-2049-4

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Cytogenetic analyses of the genus Genlisea, which is characterized by striking genome plasticity. (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät I Biowissenschaften (2015) 92 pp.

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First insights into the genotype-phenotype map of phenotypic stability in rye. J. Exp. Bot. 66 (2015) 3275-3284. https://dx.doi.org/10.1093/jxb/erv145

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