Cheng L, Wang N, Bao Z, Zhou Q, Guarracino A, Yang Y, Wang P, Zhang Z, Tang D, Zhang P, Wu Y, Zhou Y, Zheng Y, Hu Y, Lian Q, Ma Z, Lassois L, Zhang C, Lucas W J, Garrison E, Stein N, Städler T, Zhou Y, Huang S:

Leveraging a phased pangenome for haplotype design of hybrid potato. Nature (2025) Epub ahead of print. https://dx.doi.org/10.1038/s41586-024-08476-9

Cho W, Feng J, Knauft M, Albrecht S, Himmelbach A, Otto L-G, Mascher M:

An annotated haplotype-resolved genome sequence assembly of diploid German chamomile, Matricaria chamomilla. Sci. Data 12 (2025) 358. https://dx.doi.org/10.1038/s41597-025-04688-4

Goritschnig S, Weise S, Guzzon F, Maggioni L, van Hintum T, Steffensen L L, Stein N, Giuliano G:

Strengthening European research cooperation on plant genetic resources conservation and use. Genetic Resources S2 (2025) 119-134. https://dx.doi.org/10.46265/genresj.LUZJ7324

Guo W, Schreiber M, Marosi V B, Bagnaresi P, Jørgensen M E, Braune K B, Chalmers K, Chapman B, Dang V, Dockter C, Fiebig A, Fincher G B, Fricano A, Fuller J, Haaning A, Haberer G, Himmelbach A, Jayakodi M, Jia Y, Kamal N, Langridge P, Li C, Lu Q, Lux T, Mascher M, Mayer K F X, McCallum N, Milne L, Muehlbauer G J, Nielsen M T S, Padmarasu S, Pedas P R, Pillen K, Pozniak C, Rasmussen M W, Sato K, Schmutzer T, Scholz U, Schüler D, Šimková H, Skadhauge B, Stein N, Thomsen N W, Voss C, Wang P, Wonneberger R, Zhang X-Q, Zhang G, Cattivelli L, Spannagl M, Bayer M, Simpson C, Zhang R, Waugh R:

A barley pan-transcriptome reveals layers of genotype-dependent transcriptional complexity. Nat. Genet. 57 (2025) 441-450. https://dx.doi.org/10.1038/s41588-024-02069-y

Jiang C, Kan J, Gao G, Dockter C, Li C, Wu W, Yang P, Stein N:

Barley2035: A decade vision on barley research and breeding. Mol. Plant 18 (2025) 195-218. https://dx.doi.org/10.1016/j.molp.2024.12.009

Weise S, Blattner F R, Börner A, Dehmer K J, Grübe M, Harpke D, Lohwasser U, Oppermann M, Stein N, Willner E, Nagel M:

The German Federal Ex Situ Genebank for Agricultural and Horticultural Crops – Conservation, exploitation and steps towards a bio-digital resource centre. Genetic Resources S2 (2025) 91-105. https://dx.doi.org/10.46265/genresj.GYDY5145

Yuan Z, Rembe M, Mascher M, Stein N, Himmelbach A, Jayakodi M, Börner A, Oldach K, Jahoor A, Jensen J D, Rudloff J, Dohrendorf V-E, Kuhfus L P, Dyrszka E, Conte M, Hinz F, Trouchaud S, Reif J C, El Hanafi S:

High-quality phenotypic and genotypic dataset of barley genebank core collection to unlock untapped genetic diversity. GigaScience 14 (2025) giae121. https://dx.doi.org/10.1093/gigascience/giae121

Adam-Blondon A-F, Alaux M, Brouwer M, Kersey P, Lange M, Le Floch E, Pommier C, Schüler D, Stein N, Weise S:

AGENT Guidelines for dataflow. AGENT – Activated GEnebank NeTwork, Horizon Europe project no. 862613, European Commission. (2024) 18 pp. https://doi.org/10.5281/zenodo.12625359

Awais M:

Genetic control of awn roughness in barley. (PhD Thesis) Göttingen, Georg-August-Universität Göttingen, Fakultät für Agrarwissenschaften (2024) 78 pp.

Bjerg C S B, Poehlein A, Bömeke M, Himmelbach A, Schramm A, Brüggemann H:

Increased biofilm formation in dual-strain compared to single-strain communities of Cutibacterium acnes. Sci. Rep. 14 (2024) 14547. https://dx.doi.org/10.1038/s41598-024-65348-y

Boyny Z Z F:

Genetic mapping of a chemically induced pendant awn mutant in barley (Hordeum vulgare). (Master Thesis) Göttingen, Georg-August-Universität Göttingen, Fakultät für Agrarwissenschaften (2024) 56 pp.

Cavalet-Giorsa E, González-Muñoz A, Athiyannan N, Holden S, Salhi A, Gardener C, Quiroz-Chávez J, Rustamova S M, Elkot A F, Patpour M, Rasheed A, Mao L, Lagudah E S, Periyannan S K, Sharon A, Himmelbach A, Reif J C, Knauft M, Mascher M, Stein N, Chayut N, Ghosh S, Perovic D, Putra A, Perera A B, Hu C-Y, Yu G, Ahmed H I, Laquai K D, Rivera L F, Chen R, Wang Y, Gao X, Liu S, Raupp W J, Olson E L, Lee J-Y, Chhuneja P, Kaur S, Zhang P, Park R F, Ding Y, Liu D-C, Li W, Nasyrova F Y, Dvorak J, Abbasi M, Li M, Kumar N, Meyer W B, Boshoff W H P, Steffenson B J, Matny O, Sharma P K, Tiwari V K, Grewal S, Pozniak C J, Chawla H S, Ens J, Dunning L T, Kolmer J A, Lazo G R, Xu S S, Gu Y Q, Xu X, Uauy C, Abrouk M, Bougouffa S, Brar G S, Wulff B B H, Krattinger S G:

Origin and evolution of the bread wheat D genome. Nature 633 (2024) 848-855. https://dx.doi.org/10.1038/s41586-024-07808-z

Chen J, Bartoš J, Boudichevskaia A, Voigt A, Rabanus-Wallace M T, Dreissig S, Tulpová Z, Šimková H, Macas J, Kim G, Buhl J, Bürstenbinder K, Blattner F R, Fuchs J, Schmutzer T, Himmelbach A, Schubert V, Houben A:

The genetic mechanism of B chromosome drive in rye illuminated by chromosome-scale assembly. Nat. Commun. 15 (2024) 9686. https://dx.doi.org/10.1038/s41467-024-53799-w

Chen Y, Kölliker R, Mascher M, Copetti D, Himmelbach A, Stein N, Studer B:

An improved chromosome-level genome assembly of perennial ryegrass (Lolium perenne L.). GigaByte 2024 (2024) gigabyte112. https://dx.doi.org/10.46471/gigabyte.112

Fusi R, Milner S G, Rosignoli S, Bovina R, De Jesus Vieira Teixeira C, Lou H, Atkinson B S, Borkar A N, York L M, Jones D H, Sturrock C J, Stein N, Mascher M, Tuberosa R, OConnor D, Bennett M J, Bishopp A, Salvi S, Bhosale R:

The auxin efflux carrier PIN1a regulates vascular patterning in cereal roots. New Phytol. 244 (2024) 104-115. https://dx.doi.org/10.1111/nph.19777

Göbel A-M, Zhou S, Wang Z, Tzourtzou S, Himmelbach A, Zheng S, Pradillo M, Liu C, Jiang H:

Mutations of PDS5 genes enhance TAD-like domain formation Arabidopsis thaliana. Nat. Commun. 15 (2024) 9308. https://dx.doi.org/10.1038/s41467-024-53760-x

Güngör E, Savary J, Adema K, Dijkhuizen L W, Keilwagen J, Himmelbach A, Mascher M, Koppers N, Bräutigam A, Van Hove C, Riant O, Nierzwicki-Bauer S, Schluepmann H:

The crane fly glycosylated triketide δ-lactone cornicinine elicits akinete differentiation of the cyanobiont in aquatic Azolla fern symbioses. Plant Cell Environ. 47 (2024) 2675-2692. https://dx.doi.org/10.1111/pce.14907

Hansson M, Youssef H M, Zakhrabekova S, Stuart D, Svensson J T, Dockter C, Stein N, Waugh R, Lundqvist U, Franckowiak J:

A guide to barley mutants. Hereditas 161 (2024) 11. https://dx.doi.org/10.1186/s41065-023-00304-w

Huang Y, Maurer A, Giehl R F H, Zhao S, Golan G, Thirulogachandar V, Li G, Zhao Y, Trautewig C, Himmelbach A, Börner A, Jayakodi M, Stein N, Mascher M, Pillen K, Schnurbusch T:

Dynamic phytomeric growth contributes to local adaptation in barley. Mol. Biol. Evol. 41 (2024) msae011. https://dx.doi.org/10.1093/molbev/msae011

Janitza P, Zhu Z, Anwer M U, van Zanten M, Delker C:

A guide to quantify Arabidopsis seedling thermomorphogenesis at single timepoints and by interval monitoring. In: Garcia S, Nualart N (Eds.): Thermomorphogenesis: methods and protocols. (Series: Methods in molecular biology, Vol. 2795) New York: Humana (2024) 978-1-0716-3813-2, 3-16. https://dx.doi.org/10.1007/978-1-0716-3814-9_1

Jayakodi M, Lu Q, Pidon H, Rabanus-Wallace M T, Bayer M, Lux T, Guo Y, Jaegle B, Badea A, Bekele W, Brar G S, Braune K, Bunk B, Chalmers K J, Chapman B, Jørgensen M E, Feng J-W, Feser M, Fiebig A, Gundlach H, Guo W, Haberer G, Hansson M, Himmelbach A, Hoffie I, Hoffie R E, Hu H, Isobe S, König P, Kale S M, Kamal N, Keeble-Gagnère G, Keller B, Knauft M, Koppolu R, Krattinger S G, Kumlehn J, Langridge P, Li C, Marone M P, Maurer A, Mayer K F X, Melzer M, Muehlbauer G J, Murozuka E, Padmarasu S, Perovic D, Pillen K, Pin P A, Pozniak C J, Ramsay L, Pedas P R, Rutten T, Sakuma S, Sato K, Schüler D, Schmutzer T, Scholz U, Schreiber M, Shirasawa K, Simpson C, Skadhauge B, Spannagl M, Steffenson B J, Thomsen H C, Tibbits J F, Nielsen M T S, Trautewig C, Vequaud D, Voss C, Wang P, Waugh R, Westcott S, Rasmussen M W, Zhang R, Zhang X-Q, Wicker T, Dockter C, Mascher M, Stein N:

Structural variation in the pangenome of wild and domesticated barley. Nature 636 (2024) 654-662. https://dx.doi.org/10.1038/s41586-024-08187-1

Mascher M, Jayakodi M, Shim H, Stein N:

Promises and challenges of crop translational genomics. Nature 636 (2024) 585-593. https://dx.doi.org/10.1038/s41586-024-07713-5

Mascher M, Marone M P, Schreiber M, Stein N:

Are cereal grasses a single genetic system? rdcu.be/dErP0. Nat. Plants 10 (2024) 719-731. https://dx.doi.org/10.1038/s41477-024-01674-3

Pidon H, Ruge-Wehling B, Will T, Habekuß A, Wendler N, Oldach K, Maasberg-Prelle A, Korzun V, Stein N:

High-resolution mapping of Ryd4Hb, a major resistance gene to Barley yellow dwarf virus from Hordeum bulbosum. Theor. Appl. Genet. 137 (2024) 60. https://dx.doi.org/10.1007/s00122-024-04542-y

Regalado L, Appelhans M S, Poehlein A, Himmelbach A, Schmidt A R:

Plastome phylogenomics and new fossil evidence from Dominican amber shed light on the evolutionary history of the Neotropical fern genus Pecluma. Am. J. Bot. 111 (2024) e16410. https://dx.doi.org/10.1002/ajb2.16410

Satterlee J W, Alonso D, Gramazio P, Jenike K M, He J, Arrones A, Villanueva G, Plazas M, Ramakrishnan S, Benoit M, Gentile I, Hendelman A, Shohat H, Fitzgerald B, Robitaille G M, Green Y, Swartwood K, Passalacqua M J, Gagnon E, Hilgenhof R, Huggins T D, Eizenga G C, Gur A, Rutten T, Stein N, Yao S, Poncet A, Bellot C, Frary A, Knapp S, Bendahmane M, Sarkinen T, Gillis J, Van Eck J, Schatz M C, Eshed Y, Prohens J, Vilanova S, Lippman Z B:

Convergent evolution of plant prickles by repeated gene co-option over deep time. Science 385 (2024) eado1663. https://dx.doi.org/10.1126/science.ado1663

Schreiber M, Jayakodi M, Stein N, Mascher M:

Plant pangenomes for crop improvement, biodiversity and evolution. Nat. Rev. Genet. 25 (2024) 563-577. https://dx.doi.org/10.1038/s41576-024-00691-4

Schreiber M, Wonneberger R, Haaning A M, Coulter M, Russell J, Himmelbach A, Fiebig A, Muehlbauer G J, Stein N, Waugh R:

Genomic resources for a historical collection of cultivated two-row European spring barley genotypes. Sci. Data 11 (2024) 66. https://dx.doi.org/10.1038/s41597-023-02850-4

Singh K, Gulyás Z, Athmer B, Kovács B, Mednyánszky Z, Galiba G, Stein N, Simon-Sarkadi L, Kocsy G:

Comparative study of free amino acids at metabolite and gene expression levels in Triticeae during cold acclimation. J. Plant Biochem. Biotechnol. 33 (2024) 558-569. https://dx.doi.org/10.1007/s13562-024-00912-1

Szőke-Pázsi K, Kruppa K, Tulpová Z, Kalapos B, Türkösi E, Gaál E, Darkó É, Said M, Farkas A, Kovács P, Ivanizs L, Doležel J, Rabanus-Wallace M T, Molnár I, Szakács É:

DArTseq genotyping facilitates the transfer of exotic" chromatin from a Secale cereale x S. strictum hybrid into wheat." Front. Plant Sci. 15 (2024) 1407840. https://dx.doi.org/10.3389/fpls.2024.1407840

Tikhenko N, Haupt M, Fuchs J, Perovic D, Himmelbach A, Mascher M, Houben A, Rutten T, Nagel M, Tsvetkova N V, Sehmisch S, Börner A:

Major chromosome rearrangements in intergeneric wheat × rye hybrids in compatible and incompatible crosses detected by GBS read coverage analysis. Sci. Rep. 14 (2024) 11010. https://dx.doi.org/10.1038/s41598-024-61622-1

Yuan Z, Rembe M, Mascher M, Stein N, Jayakodi M, Börner A, Oldach K, Jahoor A, Jensen J D, Rudloff J, Dohrendorf V-E, Kuhfus L P, Dyrszka E, Conte M, Hinz F, Trouchaud S, Reif J C, El Hanafi S:

Capitalizing genebank core collections for rare and novel disease resistance loci to enhance barley resilience. J. Exp. Bot. 75 (2024) 5940-5954. https://dx.doi.org/10.1093/jxb/erae283

Zhang H, Fechete Lavinia I, Himmelbach A, Poehlein A, Lohwasser U, Börner A, Maalouf F, Kumar S, Khazaei H, Stein N, Jayakodi M:

Optimization of Genotyping-by-Sequencing (GBS) for germplasm fingerprinting and trait mapping in faba bean. Legume Sci. 6 (2024) e254. https://dx.doi.org/10.1002/leg3.254

Zhu Z, Trenner J, Delker C, Quint M:

Tracing the evolutionary history of the temperature-sensing prion-like domain in EARLY FLOWERING 3 highlights the uniqueness of AtELF3. Mol. Biol. Evol. 41 (2024) msae205. https://dx.doi.org/10.1093/molbev/msae205

Barchi L, Aprea G, Rabanus-Wallace M T, Toppino L, Alonso D, Portis E, Lanteri S, Gaccione L, Omondi E, van Zonneveld M, Schafleitner R, Ferrante P, Börner A, Stein N, Díez M J, Lefebvre V, Salinier J, Boyaci H F, Finkers R, Brouwer M, Bovy A G, Rotino G L, Prohens J, Giuliano G:

Analysis of >3400 worldwide eggplant accessions reveals two independent domestication events and multiple migration-diversification routes. Plant J. 116 (2023) 1667-1680. https://dx.doi.org/10.1111/tpj.16455

El Hanafi S, Jiang Y, Kehel Z, Schulthess A W, Zhao Y, Mascher M, Haupt M, Himmelbach A, Stein N, Amri A, Reif J C:

Genomic predictions to leverage phenotypic data across genebanks. Front. Plant Sci. 14 (2023) 1227656. https://dx.doi.org/10.3389/fpls.2023.1227656

Hollensteiner J, Schneider D, Poehlein A, Himmelbach A, Daniel R:

Metagenome-assembled genomes from particle-associated microbial communities in the mesopelagic zone of the Pacific Ocean. Microbiol. Resour. Announc. 12 (2023) e0061423. https://dx.doi.org/10.1128/MRA.00614-23

Huang Y, Kamal R, Shanmugaraj N, Rutten T, Thirulogachandar V, Zhao S, Hoffie I, Hensel G, Rajaraman J, Moya Y A T, Hajirezaei M-R, Himmelbach A, Poursarebani N, Lundqvist U, Kumlehn J, Stein N, von Wirén N, Mascher M, Melzer M, Schnurbusch T:

A molecular framework for grain number determination in barley. Sci. Adv. 9 (2023) eadd0324. https://dx.doi.org/10.1126/sciadv.add0324

Jayakodi M, Golicz A A, Kreplak J, Fechete L I, Angra D, Bednář P, Bornhofen E, Zhang H, Boussageon R, Kaur S, Cheung K, Čížková J, Gundlach H, Hallab A, Imbert B, Keeble-Gagnère G, Koblížková A, Kobrlová L, Krejčí P, Mouritzen T W, Neumann P, Nadzieja M, Nielsen L K, Novák P, Orabi J, Padmarasu S, Robertson-Shersby-Harvie T, Robledillo L Á, Schiemann A, Tanskanen J, Törönen P, Warsame A O, Wittenberg A H J, Himmelbach A, Aubert G, Courty P-E, Doležel J, Holm L U, Janss L L, Khazaei H, Macas J, Mascher M, Smýkal P, Snowdon R J, Stein N, Stoddard F L, Stougaard J, Tayeh N, Torres A M, Usadel B, Schubert I, OSullivan D M, Schulman A H, Andersen S U:

The giant diploid faba genome unlocks variation in a global protein crop. Nature 615 (2023) 652-659. https://dx.doi.org/10.1038/s41586-023-05791-5

König P, Beier S, Mascher M, Stein N, Lange M, Scholz U:

DivBrowse—interactive visualization and exploratory data analysis of variant call matrices. GigaScience 12 (2023) giad025. https://dx.doi.org/10.1093/gigascience/giad025

Kubalová I, Câmara A S, Cápal P, Beseda T, Rouillard J-M, Krause Gina M, Holušová K, Toegelová H, Himmelbach A, Stein N, Houben A, Doležel J, Mascher M, Šimková H, Schubert V:

Helical coiling of metaphase chromatids. Nucleic Acids Res. 51 (2023) 2641-2654. https://dx.doi.org/10.1093/nar/gkad028

Kuo Y-T, Câmara A S, Schubert V, Neumann P, Macas J, Melzer M, Chen J, Fuchs J, Abel S, Klocke E, Huettel B, Himmelbach A, Demidov D, Dunemann F, Mascher M, Ishii T, Marques A, Houben A:

Holocentromeres can consist of merely a few megabase-sized satellite arrays. Nat. Commun. 14 (2023) 3502. https://dx.doi.org/10.1038/s41467-023-38922-7

Kurra V:

Impact of resistance genes on cereal dwarf virus key epidemiological parameters in barley. (Master Thesis) Göttingen, Georg-August-Universität Göttingen, Fakultät für Agrarwissenschaften (2023) 45 pp.

McLeod L, Barchi L, Tumino G, Tripodi P, Salinier J, Gros C, Boyaci H F, Ozalp R, Borovsky Y, Schafleitner R, Barchenger D, Finkers R, Brouwer M, Stein N, Rabanus-Wallace M T, Giuliano G, Voorrips R, Paran I, Lefebvre V:

Multi-environment association study highlights candidate genes for robust agronomic quantitative trait loci in a novel worldwide Capsicum core collection. Plant J. 116 (2023) 1508-1528. https://dx.doi.org/10.1111/tpj.16425

Narisetti N, Awais M, Khan M, Stolzenburg F, Stein N, Gladilin E:

Awn image analysis and phenotyping using BarbNet. Plant Phenomics 5 (2023) 0081. https://dx.doi.org/10.34133/plantphenomics.0081

Ost C, Cao H X, Nguyen T L, Himmelbach A, Mascher M, Stein N, Humbeck K:

Drought-stress-related reprogramming of gene expression in barley involves differential histone modifications at ABA-related genes. Int. J. Mol. Sci. 24 (2023) 12065. https://dx.doi.org/10.3390/ijms241512065

Ponraj D S, Lund M, Lange J, Poehlein A, Himmelbach A, Falstie-Jensen T, Jorgensen N P, Ravn C, Brüggemann H:

Shotgun sequencing of sonication fluid for the diagnosis of orthopaedic implant-associated infections with Cutibacterium acnes as suspected causative agent. Front. Cell Infect. Microbiol. 13 (2023) 1165017. https://dx.doi.org/10.3389/fcimb.2023.1165017

Rabanus-Wallace M T, Stein N:

Accurate, automated taxonomic assignment of genebank accessions: a new method demonstrated using high-throughput marker data from 10,000 Capsicum spp. accessions. Theor. Appl. Genet. 136 (2023) 208. https://dx.doi.org/10.1007/s00122-023-04441-8

Strittmatter C S, Poehlein A, Himmelbach A, Daniel R, Steinbüchel A:

Medium-chain-length fatty acid catabolism in Cupriavidus necator H16: Transcriptome sequencing reveals differences from long-chain-length fatty acid beta-oxidation and involvement of several homologous genes. Appl. Environ. Microbiol. 89 (2023) e0142822. https://dx.doi.org/10.1128/aem.01428-22

Varshney R K, Stein N, Reif J:

Professor Andreas Graner: driven by the quest to unlock crop plant genomes for conservation and utilization of germplasm for breeding. Plant Biotechnol. J. 21 (2023) 2426-2432. https://dx.doi.org/10.1111/pbi.14143

Wonneberger R, Schreiber M, Haaning A, Muehlbauer G J, Waugh R, Stein N:

Major chromosome 5H haplotype switch structures the European two-rowed spring barley germplasm of the past 190 years. Theor. Appl. Genet. 136 (2023) 174. https://dx.doi.org/10.1007/s00122-023-04418-7

Abdollahi Sisi N, Stein N, Himmelbach A, Mohammadi S A:

High-density linkage mapping of agronomic trait QTLs in wheat under water deficit condition using genotyping by sequencing (GBS). Plants 11 (2022) 2533. https://dx.doi.org/10.3390/plants11192533

Acevedo-Garcia J, Walden K, Leissing F, Baumgarten K, Drwiega K, Kwaaitaal M, Reinstädler A, Freh M, Dong X, James G V, Baus L C, Mascher M, Stein N, Schneeberger K, Brocke-Ahmadinejad N, Kollmar M, Schulze-Lefert P, Panstruga R:

Barley Ror1 encodes a class XI myosin required for mlo-based broad-spectrum resistance to the fungal powdery mildew pathogen. Plant J. 112 (2022) 84-103. https://dx.doi.org/10.1111/tpj.15930

Afshar M, Møllebjerg A, Minero G A, Hollensteiner J, Poehlein A, Himmelbach A, Lange J, Meyer R L, Brüggemann H:

Biofilm formation and inflammatory potential of Staphylococcus saccharolyticus: A possible cause of orthopedic implant-associated infections. Front. Microbiol. 13 (2022) 1070201. https://dx.doi.org/10.3389/fmicb.2022.1070201

Aiyesa L V:

Unravelling the genetics of pod stringiness and agronomic traits of common bean (Phaseolus vulgaris L.) using genome-wide association studies and genotyping-by-sequencing. (Master Thesis) Göttingen, Georg-August-Universität Göttingen, Fakultät für Agrarwissenschaften (2022) 55 pp.

Avni R, Lux T, Minz-Dub A, Millet E, Sela H, Distelfeld A, Deek J, Yu G, Steuernagel B, Pozniak C, Ens J, Gundlach H, Mayer K F X, Himmelbach A, Stein N, Mascher M, Spannagl M, Wulff B B H, Sharon A:

Genome sequences of three Aegilops species of the section Sitopsis reveal phylogenetic relationships and provide resources for wheat improvement. Plant J. 110 (2022) 179-192. https://dx.doi.org/10.1111/tpj.15664

Boudichevskaia A, Fiebig A, Kumke K, Himmelbach A, Houben A:

Rye B chromosomes differently influence the expression of A chromosome-encoded genes depending on the host species. Chromosome Res. 30 (2022) 335-349. https://dx.doi.org/10.1007/s10577-022-09704-6

Chang C-W, Fridman E, Mascher M, Himmelbach A, Schmid K:

Physical geography, isolation by distance and environmental variables shape genomic variation of wild barley (Hordeum vulgare L. ssp. spontaneum) in the Southern Levant. Heredity 128 (2022) 107–119. https://dx.doi.org/10.1038/s41437-021-00494-x

Coulter M, Entizne J C, Guo W, Bayer M, Wonneberger R, Milne L, Schreiber M, Haaning A, Muehlbauer G, McCallum N, Fuller J, Simpson C, Stein N, Brown J W S, Waugh R, Zhang R:

BaRTv2: A highly resolved barley reference transcriptome for accurate transcript-specific RNA-seq quantification. Plant J. 111 (2022) 1183-1202. https://dx.doi.org/10.1111/tpj.15871

Dinh H X, Singh D, Gomez de la Cruz D, Hensel G, Kumlehn J, Mascher M, Stein N, Perovic D, Ayliffe M, Moscou M J, Park R F, Pourkheirandish M:

The barley leaf rust resistance gene Rph3 encodes a predicted membrane protein and is induced upon infection by avirulent pathotypes of Puccinia hordei. Nat. Commun. 13 (2022) 2386. https://dx.doi.org/10.1038/s41467-022-29840-1

Fusi R, Rosignoli S, Lou H, Sangiorgi G, Bovina R, Pattem J K, Borkar A N, Lombardi M, Forestan C, Milner S G, Davis J L, Lale A, Kirschner G K, Swarup R, Tassinari A, Pandey B K, York L M, Atkinson B S, Sturrock C J, Mooney S J, Hochholdinger F, Tucker M R, Himmelbach A, Stein N, Mascher M, Nagel K A, de Gara L, Simmonds J, Uauy C, Tuberosa R, Lynch J P, Yakubov G E, Bennett M J, Bhosale R, Salvi S:

Root angle is controlled by EGT1 in cereal crops employing a novel anti-gravitropic mechanism. Proc. Natl. Acad. Sci. U.S.A. 119 (2022) e2201350119. https://dx.doi.org/10.1073/pnas.2201350119

Gudzuhn M, Alio I, Moll R, de Vries J, Boehlich J, Assmann M, Janneschutz J, Schützenmeister N, Himmelbach A, Poehlein A, Daniel R, Streit W R:

Molecular insight into gene response of diorcinol- and rubrolide-treated biofilms of the emerging pathogen Stenotrophomonas maltophilia. Microbiol. Spectr. 10 (2022) e0258221. https://dx.doi.org/10.1128/spectrum.02582-21

Guo Y, Himmelbach A, Weiss E, Stein N, Mascher M:

Six-rowed wild-growing barleys are hybrids of diverse origins. Plant J. 111 (2022) 849-858. https://dx.doi.org/10.1111/tpj.15861

Hashemi-Petroudi S H, Arab M, Dolatabadi B, Kuo Y-T, Baez M A, Himmelbach A, Nematzadeh G, Maibody S A M M, Schmutzer T, Melzer M, Altmann T, Kuhlmann M:

Initial description of the genome of Aeluropus littoralis, a halophile grass. Front. Plant Sci. 13 (2022) 906462. https://dx.doi.org/10.3389/fpls.2022.906462

Hinterberger V, Douchkov D, Lück S, Kale S, Mascher M, Stein N, Reif J C, Schulthess A W:

Mining for new sources of resistance to powdery mildew in genetic resources of winter wheat. Front. Plant Sci. 13 (2022) 836723. https://dx.doi.org/10.3389/fpls.2022.836723

Huu C N, Plaschil S, Himmelbach A, Kappel C, Lenhard M:

Female self-incompatibility type in heterostylous Primula is determined by the brassinosteroid-inactivating cytochrome P450 CYP734A50. Curr. Biol. 32 (2022) 671-676. https://dx.doi.org/10.1016/j.cub.2021.11.046

Jiang C, Lei M, Guo Y, Gao G, Shi L, Jin Y, Cai Y, Himmelbach A, Zhou S, He Q, Yao X, Kan J, Haberer G, Duan F, Li L, Liu J, Zhang J, Spannagl M, Liu C, Stein N, Feng Z, Mascher M, Yang P:

A reference-guided TILLING by amplicon-seq platform supports forward and reverse genetics in barley. Plant Commun. 3 (2022) 100317. https://doi.org/10.1016/j.xplc.2022.100317

Kale S M, Schulthess A W, Padmarasu S, Boeven P H G, Schacht J, Himmelbach A, Steuernagel B, Wulff B B H, Reif J C, Stein N, Mascher M:

A catalogue of resistance gene homologs and a chromosome-scale reference sequence support resistance gene mapping in winter wheat. Plant Biotechnol. J. 20 (2022) 1730-1742. https://dx.doi.org/10.1111/pbi.13843

Kamal N, Tsardakas Renhuldt N, Bentzer J, Gundlach H, Haberer G, Juhász A, Lux T, Bose U, Tye-Din J A, Lang D, van Gessel N, Reski R, Fu Y-B, Spégel P, Ceplitis A, Himmelbach A, Waters A J, Bekele W A, Colgrave M L, Hansson M, Stein N, Mayer K F X, Jellen E N, Maughan P J, Tinker N A, Mascher M, Olsson O, Spannagl M, Sirijovski N:

The mosaic oat genome gives insights into a uniquely healthy cereal crop. Nature 606 (2022) 113-119. https://dx.doi.org/10.1038/s41586-022-04732-y

Keilwagen J, Lehnert H, Berner T, Badaeva E, Himmelbach A, Börner A, Kilian B:

Detecting major introgressions in wheat and their putative origins using coverage analysis. Sci. Rep. 12 (2022) 1908. https://dx.doi.org/10.1038/s41598-022-05865-w

Koppolu R, Jiang G, Milner S G, Muqaddasi Q H, Rutten T, Himmelbach A, Guo Y, Stein N, Mascher M, Schnurbusch T:

The barley mutant multiflorus2.b reveals quantitative genetic variation for new spikelet architecture. Theor. Appl. Genet. 135 (2022) 571–590. https://dx.doi.org/10.1007/s00122-021-03986-w

Lehnert H, Berner T, Lang D, Beier S, Stein N, Himmelbach A, Kilian B, Keilwagen J:

Insights into breeding history, hotspot regions of selection and untapped allelic diversity for bread wheat breeding. Plant J. 112 (2022) 897-918. https://dx.doi.org/10.1111/tpj.15952

Nagireddy S R:

Genetic mapping of a yellow-stripe variegation leaf phenotype identified in an EMS-induced mutant of the winter barley variety Igri. (Master Thesis) Göttingen, Georg-August-Universität Göttingen, Fakultät für Agrarwissenschaften (2022) 49 pp.

Navrátilová P, Toegelová H, Tulpová Z, Kuo Y-T, Stein N, Doležel J, Houben A, Šimková H, Mascher M:

Prospects of telomere-to-telomere assembly in barley: analysis of sequence gaps in the MorexV3 reference genome. Plant Biotechnol. J. 20 (2022) 1373-1386. https://dx.doi.org/10.1111/pbi.13816

Osatohanmwen B E:

Multi-omics analysis of barley HEB-25 population - Linking genotype with phenotype using genomic networking. (Master Thesis) Göttingen, Georg-August-Universität Göttingen, Fakultät für Agrarwissenschaften (2022) 59 pp.

Rabanus-Wallace M T, Stein N:

Why 2022 is a revolutionary year for potato genomics. Mol. Plant 15 (2022) 1257-1259. https://dx.doi.org/10.1016/j.molp.2022.06.015

Sakkour A, Mascher M, Himmelbach A, Haberer G, Lux T, Spannagl M, Stein N, Kawamoto S, Sato K:

Chromosome-scale assembly of barley Cv. Haruna Nijo as a resource for barley genetics. DNA Res. 29 (2022) dsac001. https://dx.doi.org/10.1093/dnares/dsac001

Schreiber M, Gao Y, Koch N, Fuchs J, Heckmann S, Himmelbach A, Börner A, Özkan H, Maurer A, Stein N, Mascher M, Dreissig S:

Recombination landscape divergence between populations is marked by larger low-recombining regions in domesticated rye. Mol. Biol. Evol. 39 (2022) msac131. https://dx.doi.org/10.1093/molbev/msac131

Schulthess A W, Kale S M, Liu F, Zhao Y, Philipp N, Rembe M, Jiang Y, Beukert U, Serfling A, Himmelbach A, Fuchs J, Oppermann M, Weise S, Boeven P H G, Schacht J, Longin C F H, Kollers S, Pfeiffer N, Korzun V, Lange M, Scholz U, Stein N, Mascher M, Reif J C:

Genomics-informed prebreeding unlocks the diversity in genebanks for wheat improvement. Nat. Genet. 54 (2022) 1544-1552. https://dx.doi.org/10.1038/s41588-022-01189-7

Schulthess A W, Kale S M, Zhao Y, Gogna A, Rembe M, Philipp N, Liu F, Beukert U, Serfling A, Himmelbach A, Oppermann M, Weise S, Boeven P H G, Schacht J, Longin C F H, Kollers S, Pfeiffer N, Korzun V, Fiebig A, Schüler D, Lange M, Scholz U, Stein N, Mascher M, Reif J C:

Large-scale genotyping and phenotyping of a worldwide winter wheat genebank for its use in pre-breeding. Sci. Data 9 (2022) 784. https://dx.doi.org/10.1038/s41597-022-01891-5

Téran M A:

Accessing maize pangenome graphs. (Master Thesis) Göttingen, Georg-August-Universität Göttingen, Fakultät für Agrarwissenschaften (2022) 48 pp.

Wicker T, Stritt C, Sotiropoulos A G, Poretti M, Pozniak C, Walkowiak S, Gundlach H, Stein N:

Transposable element populations shed light on the evolutionary history of wheat and the complex co-evolution of autonomous and non-autonomous retrotransposons. Adv. Genet. 3 (2022) 2100022. https://dx.doi.org/10.1002/ggn2.202100022

Wilde P, Korzun V, Menzel J, Zhou R, Stein N, Hackauf B:

Restorer Pflanze. (Industrieanmeldung durch KWS SAAT SE & CO KGAA) Offenlegung: 29.06.2017, IPK-Nr.: 2014/04, WO2017109012A1; Erteilung in EP als EP3393234B1 am 15.12.2021 und in USA als US11312967B2 am 26.04.2022. (2022).

Yu G, Matny O, Champouret N, Steuernagel B, Moscou M J, Hernández-Pinzón I, Green P, Hayta S, Smedley M, Harwood W, Kangara N, Yue Y, Gardener C, Banfield M J, Olivera P D, Welchin C, Simmons J, Millet E, Minz-Dub A, Ronen M, Avni R, Sharon A, Patpour M, Justesen A F, Jayakodi M, Himmelbach A, Stein N, Wu S, Poland J, Ens J, Pozniak C, Karafiátová M, Molnár I, Doležel J, Ward E R, Reuber T L, Jones J D G, Mascher M, Steffenson B J, Wulff B B H:

Aegilops sharonensis genome-assisted identification of stem rust resistance gene Sr62. Nat. Commun. 13 (2022) 1607. https://dx.doi.org/10.1038/s41467-022-29132-8

Barchi L, Rabanus-Wallace M T, Prohens J, Toppino L, Padmarasu S, Portis E, Rotino G L, Stein N, Lanteri S, Giuliano G:

Improved genome assembly and pan-genome provide key insights on eggplant domestication and breeding. Plant J. 107 (2021) 579-596. https://dx.doi.org/10.1111/tpj.15313

Gao L, Koo D-H, Juliana P, Rife T, Singh D, Lemes da Silva C, Lux T, Dorn K M, Clinesmith M, Silva P, Wang X, Spannagl M, Monat C, Friebe B, Steuernagel B, Muehlbauer G J, Walkowiak S, Pozniak C, Singh R, Stein N, Mascher M, Fritz A, Poland J:

The Aegilops ventricosa 2NvS segment in bread wheat: cytology, genomics and breeding. Theor. Appl. Genet. 134 (2021) 529–542. https://dx.doi.org/10.1007/s00122-020-03712-y

Gonzalez M Y, Zhao Y, Jiang Y, Stein N, Habekuss A, Reif J C, Schulthess A W:

Genomic prediction models trained with historical records enable populating the German ex situ genebank bio-digital resource center of barley (Hordeum sp.) with information on resistances to soilborne barley mosaic viruses. Theor. Appl. Genet. 134 (2021) 2181–2196. https://dx.doi.org/10.1007/s00122-021-03815-0

Hackauf B, Rabanus-Wallace M T, Korzun V:

Bridging the genotype–phenotype gap for precision breeding in rye. In: Rabanus-Wallace M T, Stein N (Eds.): The rye genome. (Series: Compendium of plant genomes) Cham: Springer (2021) ISBN 978-3-030-83383-1, 135-180. https://dx.doi.org/10.1007/978-3-030-83383-1_9

Hoencamp C, Dudchenko O, Elbatsh A M O, Brahmachari S, Raaijmakers J A, van Schaik T, Sedeño Cacciatore Á, Contessoto V G, van Heesbeen R G H P, van den Broek B, Mhaskar A N, Teunissen H, St Hilaire B G, Weisz D, Omer A D, Pham M, Colaric Z, Yang Z, Rao S S P, Mitra N, Lui C, Yao W, Khan R, Moroz L L, Kohn A, St. Leger J, Mena A, Holcroft K, Gambetta M C, Lim F, Farley E, Stein N, Haddad A, Chauss D, Mutlu A S, Wang M C, Young N D, Hildebrandt E, Cheng H H, Knight C J, Burnham T L U, Hovel K A, Beel A J, Mattei P-J, Kornberg R D, Warren W C, Cary G, Gómez-Skarmeta J L, Hinman V, Lindblad-Toh K, Di Palma F, Maeshima K, Multani A S, Pathak S, Nel-Themaat L, Behringer R R, Kaur P, Medema R H, van Steensel B, de Wit E, Onuchic J N, Di Pierro M, Lieberman Aiden E, Rowland B D:

3D genomics across the tree of life reveals condensin II as a determinant of architecture type. Science 372 (2021) 984-989. https://dx.doi.org/10.1126/science.abe2218

Jayakodi M, Schreiber M, Stein N, Mascher M:

Building pan-genome infrastructures for crop plants and their use in association genetics. DNA Res. 28 (2021) dsaa030. https://dx.doi.org/10.1093/dnares/dsaa030

Li G, Wang L, Yang J, He H, Jin H, Li X, Ren T, Ren Z, Li F, Han X, Zhao X, Dong L, Li Y, Song Z, Yan Z, Zheng N, Shi C, Wang Z, Yang S, Xiong Z, Zhang M, Sun G, Zheng X, Gou M, Ji C, Du J, Zheng H, Doležel J, Deng X W, Stein N, Yang Q, Zhang K, Wang D:

A high-quality genome assembly highlights rye genomic characteristics and agronomically important genes. Nat. Genet. 53 (2021) 574-584. https://dx.doi.org/10.1038/s41588-021-00808-z

Li M, Guo G, Pidon H, Melzer M, Prina A R, Börner T, Stein N:

ATP-dependent Clp protease subunit C1, HvClpC1, is a strong candidate gene for barley variegation mutant luteostrians as revealed by genetic mapping and genomic re-sequencing. Front. Plant Sci. 12 (2021) 664085. https://dx.doi.org/10.3389/fpls.2021.664085

Li M, Hensel G, Melzer M, Junker A, Tschiersch H, Ruwe H, Arend D, Kumlehn J, Börner T, Stein N:

Mutation of the ALBOSTRIANS ohnologous gene HvCMF3 impairs chloroplast development and thylakoid architecture in barley. Front. Plant Sci. 12 (2021) 732608. https://dx.doi.org/10.3389/fpls.2021.732608

Li M, Ruwe H, Melzer M, Junker A, Hensel G, Tschiersch H, Schwenkert S, Chamas S, Schmitz-Linneweber C, Börner T, Stein N:

The Arabidopsis AAC proteins CIL and CIA2 are sub-functionalized paralogs involved in chloroplast development. Front. Plant Sci. 12 (2021) 681375. https://dx.doi.org/10.3389/fpls.2021.681375

Mascher M, Jayakodi M, Stein N:

The reinvention of potato. Cell Res. 31 (2021) 1144–1145. https://dx.doi.org/10.1038/s41422-021-00542-5

Mascher M, Wicker T, Jenkins J, Plott C, Lux T, Koh C S, Ens J, Gundlach H, Boston L B, Tulpová Z, Holden S, Hernández-Pinzón I, Scholz U, Mayer K F X, Spannagl M, Pozniak C J, Sharpe A G, Šimková H, Moscou M J, Grimwood J, Schmutz J, Stein N:

Long-read sequence assembly: a technical evaluation in barley. Plant Cell 33 (2021) 1888-1906. https://dx.doi.org/10.1093/plcell/koab077

Otto L-G, Sonnenschein M, Faehnrich B, Franz C, Ruzicka J, Novak J, Fraust B, He S, Himmelbach A, Plocharski B, Bubner U, Albrecht S, Plescher A, Sharbel T:

Entwicklung einer sterilen Kamillensorte zur Erweiterung der Anbaufläche in Deutschland. J. Kulturpfl. 73 (2021) 173-174.

Pidon H, Wendler N, Habekubeta A, Maasberg A, Ruge-Wehling B, Perovic D, Ordon F, Stein N:

High-resolution mapping of Rym14Hb, a wild relative resistance gene to barley yellow mosaic disease. Theor. Appl. Genet. 134 (2021) 823-833. https://dx.doi.org/10.1007/s00122-020-03733-7

Rabanus-Wallace M T, Hackauf B, Mascher M, Lux T, Wicker T, Gundlach H, Baez M, Houben A, Mayer K F X, Guo L, Poland J, Pozniak C J, Walkowiak S, Melonek J, Praz C R, Schreiber M, Budak H, Heuberger M, Steuernagel B, Wulff B, Börner A, Byrns B, Čížková J, Fowler D B, Fritz A, Himmelbach A, Kaithakottil G, Keilwagen J, Keller B, Konkin D, Larsen J, Li Q, Myśków B, Padmarasu S, Rawat N, Sesiz U, Biyiklioglu-Kaya S, Sharpe A, Šimková H, Small I, Swarbreck D, Toegelová H, Tsvetkova N, Voylokov A V, Vrána J, Bauer E, Bolibok-Bragoszewska H, Doležel J, Hall A, Jia J, Korzun V, Laroche A, Ma X-F, Ordon F, Özkan H, Rakoczy-Trojanowska M, Scholz U, Schulman A H, Siekmann D, Stojalowski S, Tiwari V K, Spannagl M, Stein N:

Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential. Nat. Genet. 53 (2021) 564-573. https://dx.doi.org/10.1038/s41588-021-00807-0

Rabanus-Wallace M T, Stein N (Eds.):

The rye genome. (Series: Compendium of plant genomes) : Springer Nature Switzerland AG (2021) ISBN 978-3-030-83383-1, https://dx.doi.org/10.1007/978-3-030-83383-1

Rabanus-Wallace M T, Wang D, Yang J, Li G, Stein N:

Assembling the rye genome. In: Rabanus-Wallace M T, Stein N (Eds.): The rye genome. (Series: Compendium of plant genomes) Cham: Springer (2021) ISBN 978-3-030-83383-1, 101-116. https://dx.doi.org/10.1007/978-3-030-83383-1_7

Sato K, Mascher M, Himmelbach A, Haberer G, Spannagl M, Stein N:

Chromosome-scale assembly of wild barley accession ‘OUH602’. G3 Genes Genom. Genet. 11 (2021) jkab244. https://doi.org/10.1093/g3journal/jkab244

Shimizu K K, Copetti D, Okada M, Wicker T, Tameshige T, Hatakeyama M, Shimizu-Inatsugi R, Aquino C, Nishimura K, Kobayashi F, Murata K, Kuo T, Delorean E, Poland J, Haberer G, Spannagl M, Mayer K F X, Gutierrez-Gonzalez J, Muehlbauer G J, Monat C, Himmelbach A, Padmarasu S, Mascher M, Walkowiak S, Nakazaki T, Ban T, Kawaura K, Tsuji H, Pozniak C, Stein N, Sese J, Nasuda S, Handa H:

De novo genome assembly of the Japanese wheat cultivar Norin 61 highlights functional variation in flowering time and Fusarium resistance genes in East Asian genotypes. Plant Cell Physiol. 62 (2021) 8-27. https://dx.doi.org/10.1093/pcp/pcaa152

Thiel J, Koppolu R, Trautewig C, Hertig C, Kale S M, Erbe S, Mascher M, Himmelbach A, Rutten T, Esteban E, Pasha A, Kumlehn J, Provart N J, Vanderauwera S, Frohberg C, Schnurbusch T:

Transcriptional landscapes of floral meristems in barley. Sci. Adv. 7 (2021) eabf0832. https://dx.doi.org/10.1126/sciadv.abf0832

Tripodi P, Rabanus-Wallace M T, Barchi L, Kale S, Esposito S, Acquadro A, Schafleitner R, van Zonneveld M, Prohens J, Diez M J, Börner A, Salinier J, Caromel B, Bovy A, Boyaci F, Pasev G, Brandt R, Himmelbach A, Portis E, Finkers R, Lanteri S, Paran I, Lefebvre V, Giuliano G, Stein N:

Global range expansion history of pepper (Capsicum spp.) revealed by over 10,000 genebank accessions. Proc. Natl. Acad. Sci. U.S.A. 118 (2021) e2104315118. https://dx.doi.org/10.1073/pnas.2104315118

Wolde G M, Schreiber M, Trautewig C, Himmelbach A, Sakuma S, Mascher M, Schnurbusch T:

Genome-wide identification of loci modifying spike-branching in tetraploid wheat. Theor. Appl. Genet. 134 (2021) 1925–1943. https://dx.doi.org/10.1007/s00122-020-03743-5

Bog M, Xu S, Himmelbach A, Brandt R, Wagner F, Appenroth K J, Sree K S:

Genotyping-by-sequencing for species delimitation in Lemna section Uninerves Hegelm. (Lemnaceae). In: Cao X H, Fourounjian P, Wang W (Eds.): The duckweed genomes. (Series: Compendium of plant genomes) Cham: Springer (2020) 115-123. https://doi.org/10.1007/978-3-030-11045-1_11

Chu J, Zhao Y, Beier S, Schulthess A W, Stein N, Philipp N, Röder M S, Reif J C:

Suitability of single-nucleotide polymorphism arrays versus genotyping-by-sequencing for genebank genomics in wheat. Front. Plant Sci. 11 (2020) 42. https://dx.doi.org/10.3389/fpls.2020.00042

Dreissig S, Fuchs J, Himmelbach A, Mascher M, Houben A:

Quantification of recombination rate and segregation distortion by genotyping and sequencing of single pollen nuclei. In: Pradillo M, Heckmann S (Eds.): Plant Meiosis: methods and protocols. (Series: Methods in molecular biology, Vol. 2061) New York, NY: Humana Press (2020) 978-1-4939-9817-3, 281-300. https://dx.doi.org/10.1007/978-1-4939-9818-0_20

Haas M, Himmelbach A, Mascher M:

The contribution of cis- and trans-acting variants to gene regulation in wild and domesticated barley under cold stress and control conditions. J. Exp. Bot. 71 (2020) 2573-2584. https://dx.doi.org/10.1093/jxb/eraa036

Hoseinzadeh P, Ruge-Wehling B, Schweizer P, Stein N, Pidon H:

High resolution mapping of a Hordeum bulbosum-derived powdery mildew resistance locus in barley using distinct homologous introgression lines. Front. Plant Sci. 11 (2020) 225. https://dx.doi.org/10.3389/fpls.2020.00225

Jayakodi M, Padmarasu S, Haberer G, Bonthala V S, Gundlach H, Monat C, Lux T, Kamal N, Lang D, Himmelbach A, Ens J, Zhang X Q, Angessa T T, Zhou G, Tan C, Hill C, Wang P, Schreiber M, Boston L B, Plott C, Jenkins J, Guo Y, Fiebig A, Budak H, Xu D, Zhang J, Wang C, Grimwood J, Schmutz J, Guo G, Zhang G, Mochida K, Hirayama T, Sato K, Chalmers K J, Langridge P, Waugh R, Pozniak C J, Scholz U, Mayer K F X, Spannagl M, Li C, Mascher M, Stein N:

The barley pan-genome reveals the hidden legacy of mutation breeding. Nature 588 (2020) 284-289. https://dx.doi.org/10.1038/s41586-020-2947-8

König P, Beier S, Basterrechea M, Schüler D, Arend D, Mascher M, Stein N, Scholz U, Lange M:

BRIDGE – a visual analytics web tool for barley genebank genomics. Front. Plant Sci. 11 (2020) 701. https://dx.doi.org/10.3389/fpls.2020.00701

Liu F, Zhao Y, Beier S, Jiang Y, Thorwarth P, Longin C F H, Ganal M, Himmelbach A, Reif J C, Schulthess A W:

Exome association analysis sheds light onto leaf rust (Puccinia triticina) resistance genes currently used in wheat breeding (Triticum aestivum L.). Plant Biotechnol. J. 18 (2020) 1396-1408. https://dx.doi.org/10.1111/pbi.13303

McCouch S, Navabi K, Abberton M, Anglin N L, Barbieri R L, Baum M, Bett K, Booker H, Brown G L, Bryan G J, Cattivelli L, Charest D, Eversole K, Freitas M, Ghamkhar K, Grattapaglia D, Henry R, Valadares Inglis M C, Islam T, Kehel Z, Kersey P J, Kresovich S, Marden E, Mayes S, Ndjiondjop M N, Nguyen H T, Paiva S, Papa R, Phillips P W B, Rasheed A, Richards C, Rouard M, Amstalden Sampaio M J, Scholz U, Shaw P D, Sherman B, Staton S E, Stein N, Svensson J, Tester M, Montenegro Valls J F, Varshney R, Visscher S, von Wettberg E, Waugh R, Wenzl P W B, Rieseberg L H:

Mobilizing crop biodiversity. Mol. Plant 13 (2020) 1341-1344. https://dx.doi.org/10.1016/j.molp.2020.08.011

Pidon H, Stein N:

Mapping and exploiting the barley genome – techniques for mapping genes and relating them to desirable traits. In: Fox G, Li C (Eds.): Achieving sustainable cultivation of barley. (Burleigh Dodds Series in Agricultural Science, Vol. 74) Cambridge, UK: Burleigh Dodds (2020) ISBN 978-1-78676-308-2, 123-158.

Poursarebani N, Trautewig C, Melzer M, Nussbaumer T, Lundqvist U, Rutten T, Schmutzer T, Brandt R, Himmelbach A, Altschmied L, Koppolu R, Youssef H M, Sibout R, Dalmais M, Bendahmane A, Stein N, Xin Z, Schnurbusch T:

COMPOSITUM 1 contributes to the architectural simplification of barley inflorescence via meristem identity signals. Nat. Commun. 11 (2020) 5138. https://dx.doi.org/10.1038/s41467-020-18890-y

Reddy Kunam J:

Genome-wide association studies of different spike traits and grain traits in a population of European two-rowed spring barleys. (Master Thesis) Göttingen, Georg-August-Universität (2020) 76 pp.

Ruban A, Schmutzer T, Wu D D, Fuchs J, Boudichevskaia A, Rubtsova M, Pistrick K, Melzer M, Himmelbach A, Schubert V, Scholz U, Houben A:

Supernumerary B chromosomes of Aegilops speltoides undergo precise elimination in roots early in embryo development. Nat. Commun. 11 (2020) 2764. https://dx.doi.org/10.1038/s41467-020-16594-x

Schreiber M, Mascher M, Wright J, Padmarasu S, Himmelbach A, Heavens D, Milne L, Clavijo B J, Stein N, Waugh R:

A genome assembly of the barley transformation reference cultivar Golden Promise. G3-Genes Genom. Genet. 10 (2020) 1823-1827. https://dx.doi.org/10.1534/g3.119.401010

Stein N, Zhou R:

Wiederherstellungsgene zytoplasmatisch bedingter männlicher Sterilität in Weizen, molekulare Marker und deren Verwendung. (Industrieanmeldung), Veröffentlichung: 07.10.2020, IPK-Nr. 2018/01. EP3718397A1. (2020).

Tikhenko N, Alqudah A M, Borisjuk L, Ortleb S, Rutten T, Wu D D, Nagel M, Himmelbach A, Mascher M, Röder M, Ganal M, Sehmisch S, Houben A, Börner A:

DEFECTIVE ENDOSPERM-D1 (Dee-D1) is crucial for endosperm development in hexaploid wheat. Commun. Biol. 3 (2020) 791. https://doi.org/10.1038/s42003-020-01509-9

Walkowiak S, Gao L, Monat C, Haberer G, Kassa M T, Brinton J, Ramirez-Gonzalez R H, Kolodziej M C, Delorean E, Thambugala D, Klymiuk V, Byrns B, Gundlach H, Bandi V, Siri J N, Nilsen K, Aquino C, Himmelbach A, Copetti D, Ban T, Venturini L, Bevan M, Clavijo B, Koo D H, Ens J, Wiebe K, NDiaye A, Fritz A K, Gutwin C, Fiebig A, Fosker C, Fu B X, Accinelli G G, Gardner K A, Fradgley N, Gutierrez-Gonzalez J, Halstead-Nussloch G, Hatakeyama M, Koh C S, Deek J, Costamagna A C, Fobert P, Heavens D, Kanamori H, Kawaura K, Kobayashi F, Krasileva K, Kuo T, McKenzie N, Murata K, Nabeka Y, Paape T, Padmarasu S, Percival-Alwyn L, Kagale S, Scholz U, Sese J, Juliana P, Singh R, Shimizu-Inatsugi R, Swarbreck D, Cockram J, Budak H, Tameshige T, Tanaka T, Tsuji H, Wright J, Wu J, Steuernagel B, Small I, Cloutier S, Keeble-Gagnere G, Muehlbauer G, Tibbets J, Nasuda S, Melonek J, Hucl P J, Sharpe A G, Clark M, Legg E, Bharti A, Langridge P, Hall A, Uauy C, Mascher M, Krattinger S G, Handa H, Shimizu K K, Distelfeld A, Chalmers K, Keller B, Mayer K F X, Poland J, Stein N, McCartney C A, Spannagl M, Wicker T, Pozniak C J:

Multiple wheat genomes reveal global variation in modern breeding. Nature 588 (2020) 277-283. https://dx.doi.org/10.1038/s41586-020-2961-x

Youssef H M, Allam M, Boussora F, Himmelbach A, Milner S G, Mascher M, Schnurbusch T:

Dissecting the genetic basis of lateral and central spikelet development and grain traits in intermedium-spike barley (Hordeum vulgare convar. intermedium). Plants 9 (2020) 1655. https://dx.doi.org/10.3390/plants9121655

Agarwal G, Clevenger J, Kale S M, Wang H, Pandey M K, Choudhary D, Yuan M, Wang X, Culbreath A K, Holbrook C C, Liu X, Varshney R K, Guo B:

A recombination bin-map identified a major QTL for resistance to Tomato Spotted Wilt Virus in peanut (Arachis hypogaea). Sci. Rep. 9 (2019) 18246. https://dx.doi.org/10.1038/s41598-019-54747-1

Awais M:

Genetic mapping of a locus on chromosome 7H controlling barb formation on barley awns. (Master Thesis) Göttingen, Georg-August-Universität (2019) 35 pp.

Breen J, Rabanus-Wallace M T:

New tricks for old wheat. Nat. Plants 5 (2019) 1108-1109. https://dx.doi.org/10.1038/s41477-019-0528-3

Bustos-Korts D, Dawson I K, Russell J, Tondelli A, Guerra D, Ferrandi C, Strozzi F, Nicolazzi E L, Molnar-Lang M, Ozkan H, Megyeri M, Miko P, Cakir E, Yakisir E, Trabanco N, Delbono S, Kyriakidis S, Booth A, Cammarano D, Mascher M, Werner P, Cattivelli L, Rossini L, Stein N, Kilian B, Waugh R, van Eeuwijk F A:

Exome sequences and multi-environment field trials elucidate the genetic basis of adaptation in barley. Plant J. 99 (2019) 1172-1191. https://dx.doi.org/10.1111/tpj.14414

Darrier B, Russell J, Milner S G, Hedley P E, Shaw P D, Macaulay M, Ramsay L D, Halpin C, Mascher M, Fleury D L, Langridge P, Stein N, Waugh R:

A comparison of mainstream genotyping platforms for the evaluation and use of barley genetic resources. Front. Plant Sci. 10 (2019) 544. https://dx.doi.org/10.3389/fpls.2019.00544

Hoseinzadeh H, Zhou R, Mascher M, Himmelbach A, Niks R E, Schweizer P, Stein N:

High resolution genetic and physical mapping of a major powdery mildew resistance locus in barley. Front. Plant Sci. 10 (2019) 146. https://dx.doi.org/10.3389/fpls.2019.00146

Jain A, Roorkiwal M, Kale S, Garg V, Yadala R, Varshney R K:

InDel markers: An extended marker resource for molecular breeding in chickpea. PLoS One 14 (2019) e0213999. https://dx.doi.org/10.1371/journal.pone.0213999

Jost M, Szurman-Zubrzycka M, Gajek K, Szarejko I, Stein N:

TILLING in barley. In: Harwood W A (Ed.): Barley: methods and protocols. (Series: Methods in molecular biology, Vol. 1900) New York, NY: Humana Press (2019) 978-1-4939-8944-7, 73-94. https://dx.doi.org/10.1007/978-1-4939-8944-7_6

Keilwagen J, Lehnert H, Berner T, Beier S, Scholz U, Himmelbach A, Stein N, Badaeva E D, Lang D, Kilian B, Hackauf B, Perovic D:

Detecting large chromosomal modifications using short read data from genotyping-by-sequencing. Front. Plant Sci. 10 (2019) 1133. https://dx.doi.org/10.3389/fpls.2019.01133

Li M, Hensel G, Mascher M, Melzer M, Budhagatapalli N, Rutten T, Himmelbach A, Beier S, Korzun V, Kumlehn J, Boerner T, Stein N:

Leaf variegation and impaired chloroplast development caused by a truncated CCT domain gene in albostrians barley. Plant Cell 31 (2019) 1430-1445. https://dx.doi.org/10.1105/tpc.19.00132

Maccaferri M, Harris N S, Twardziok S O, Pasam R K, Gundlach H, Spannagl M, Ormanbekova D, Lux T, Prade V M, Milner S G, Himmelbach A, Mascher M, Bagnaresi P, Faccioli P, Cozzi P, Lauria M, Lazzari B, Stella A, Manconi A, Gnocchi M, Moscatelli M, Avni R, Deek J, Biyiklioglu S, Frascaroli E, Corneti S, Salvi S, Sonnante G, Desiderio F, Mare C, Crosatti C, Mica E, Ozkan H, Kilian B, De Vita P, Marone D, Joukhadar R, Mazzucotelli E, Nigro D, Gadaleta A, Chao S, Faris J D, Melo A T O, Pumphrey M, Pecchioni N, Milanesi L, Wiebe K, Ens J, MacLachlan R P, Clarke J M, Sharpe A G, Koh C S, Liang K Y H, Taylor G J, Knox R, Budak H, Mastrangelo A M, Xu S S, Stein N, Hale I, Distelfeld A, Hayden M J, Tuberosa R, Walkowiak S, Mayer K F X, Ceriotti A, Pozniak C J, Cattivelli L:

Durum wheat genome highlights past domestication signatures and future improvement targets. Nat. Genet. 51 (2019) 885-895. https://dx.doi.org/10.1038/s41588-019-0381-3

Mascher M, Schreiber M, Scholz U, Graner A, Reif J C, Stein N:

Genebank genomics bridges the gap between the conservation of crop diversity and plant breeding. Nat. Genet. 51 (2019) 1076-1081. https://dx.doi.org/10.1038/s41588-019-0443-6

Melonek J, Zhou R, Bayer P E, Edwards D, Stein N, Small I:

High intraspecific diversity of Restorer-of-fertility-like genes in barley. Plant J. 97 (2019) 281-295. https://dx.doi.org/10.1111/tpj.14115

Milner S G, Jost M, Taketa S, Mazón E R, Himmelbach A, Oppermann M, Weise S, Knüpffer H, Basterrechea M, König P, Schüler D, Sharma R, Pasam R K, Rutten T, Guo G, Xu D, Zhang J, Herren G, Müller T, Krattinger S G, Keller B, Jiang Y, González M Y, Zhao Y, Habekuß A, Färber S, Ordon F, Lange M, Börner A, Graner A, Reif J C, Scholz U, Mascher M, Stein N:

Genebank genomics highlights the diversity of a global barley collection. Nat. Genet. 51 (2019) 319-326. https://doi.org/10.1038/s41588-018-0266-x

Monat C, Padmarasu S, Lux T, Wicker T, Gundlach H, Himmelbach A, Ens J, Li C, Muehlbauer G J, Schulman A H, Waugh R, Braumann I, Pozniak C, Scholz U, Mayer K F X, Spannagl M, Stein N, Mascher M:

TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools. Genome Biol. 20 (2019) 284. https://dx.doi.org/10.1186/s13059-019-1899-5

Monat C, Schreiber M, Stein N, Mascher M:

Prospects of pan-genomics in barley. Theor. Appl. Genet. 132 (2019) 785–796. https://dx.doi.org/10.1007/s00122-018-3234-z

Padmarasu S, Himmelbach A, Mascher M, Stein N:

In situ Hi-C for plants: an improved method to detect long-range chromatin interactions. In: Chekanova J, Wang H-L (Eds.): Plant long non-coding RNAs: methods and protocols. (Series: Methods in molecular biology, Vol. 1933) New York, NY: Humana Press (2019) ISBN 978-1-4939-9044-3, 441-472. https://doi.org/10.1007/978-1-4939-9045-0_28

Pont C, Leroy T, Seidel M, Tondelli A, Duchemin W, Armisen D, Lang D, Bustos-Korts D, Goué N, Balfourier F, Molnár-Láng M, Lage J, Kilian B, Özkan H, Waite D, Dyer S, Letellier T, Alaux M, Russell J, Keller B, van Eeuwijk F, Spannagl M, Mayer K F X, Waugh R, Stein N, Cattivelli L, Haberer G, Charmet G, Salse J, Wheat and Barley Legacy for Breeding Improvement Consortium:

Tracing the ancestry of modern bread wheats. Nat. Genet. 51 (2019) 905-911. https://dx.doi.org/10.1038/s41588-019-0393-z

Rabanus-Wallace M T, Stein N:

Progress in sequencing of Triticeae genomes and future uses. In: Miedaner T, Korzun V (Eds.): Applications of genetic and genomic research in cereals. (Woodhead Publishing Series in Food Science, Technology and Nutrition) Duxford, UK u.a.: Elsevier Ltd. (2019) ISBN 978-0-08-102163-7, 19-48. https://doi.org/10.1016/B978-0-08-102163-7.00002-8

Radchuk V, Sharma R, Potokina E, Radchuk R, Weier D, Munz E, Schreiber M, Mascher M, Stein N, Wicker T, Kilian B, Borisjuk L:

The highly divergent Jekyll genes, required for sexual reproduction, are lineage specific for the related grass tribes Triticeae and Bromeae. Plant J. 98 (2019) 961-974. https://dx.doi.org/10.1111/tpj.14363

Schreiber M, Himmelbach A, Börner A, Mascher M:

Genetic diversity and relationship of domesticated rye and its wild relatives as revealed through genotyping-by-sequencing. Evol. Appl. 12 (2019) 66-77. https://dx.doi.org/10.1111/eva.12624

White L C, Fontsere C, Lizano E, Hughes D A, Angedakin S, Arandjelovic M, Granjon A C, Hans J B, Lester J D, Rabanus-Wallace M T, Rowney C, Städele V, Marques-Bonet T, Langergraber K E, Vigilant L:

A roadmap for high-throughput sequencing studies of wild animal populations using non-invasive samples and hybridization capture. Mol. Ecol. Resour. 19 (2019) 609-622. https://dx.doi.org/10.1111/1755-0998.12993

Altmann S, Muino J M, Lortzing V, Brandt R, Himmelbach A, Altschmied L, Hilker M:

Transcriptomic basis for reinforcement of elm antiherbivore defence mediated by insect egg deposition. Mol. Ecol. 27 (2018) 4901-4915. https://dx.doi.org/10.1111/mec.14900

Brandt R, Mascher M, Thiel J:

Laser-capture microdissection-based RNA-seq of barley grain tissues. In: Murray G I (Ed.): Laser Capture Microdissection: Methods and Protocols. (Series: Methods in molecular biology, Vol. 1723) New York, NY: Humana Press (2018) ISBN 978-1-4939-7557-0, 397-409. https://doi.org/10.1007/978-1-4939-7558-7_23

Braumann I, Dockter C, Beier S, Himmelbach A, Lok F, Lundqvist U, Skadhauge B, Stein N, Zakhrabekova S, Zhou R, Hansson M:

Mutations in the gene of the Gα subunit of the heterotrimeric G protein are the cause for the brachytic1 semi-dwarf phenotype in barley and applicable for practical breeding. Hereditas 155 (2018) 10. https://dx.doi.org/10.1186/s41065-017-0045-1

Chen J, Scholz U, Zhou R, Lange M:

LAILAPS-QSM: A RESTful API and JAVA library for semantic query suggestions. PLoS Comput. Biol. 14 (2018) e1006058. https://dx.doi.org/10.1371/journal.pcbi.1006058

Hansson M, Komatsuda T, Stein N, Muehlbauer G J:

Molecular mapping and cloning of genes and QTLs. In: Stein N, Muehlbauer G J (Eds.): The Barley Genome, 1st ed. (Series: Kole, C (Ed.): Compendium of Plant Genomes) Cham: Springer (2018) ISBN 978-3-319-92528-8, 139-154. https://dx.doi.org/10.1007/978-3-319-92528-8_10

Himmelbach A, Ruban A, Walde I, Šimková H, Doležel J, Hastie A, Stein N, Mascher M:

Discovery of multi-megabase polymorphic inversions by chromosome conformation capture sequencing in large-genome plant species. Plant J. 96 (2018) 1309-1316. https://dx.doi.org/10.1111/tpj.14109

Himmelbach A, Walde I, Mascher M, Stein N:

Tethered chromosome conformation capture sequencing in Triticeae: a valuable tool for genome assembly. Bio-protocol 8 (2018) e2955. https://dx.doi.org/10.21769/BioProtoc.2955

Hoseinzadeh P:

High resolution genetic and physical mapping of a major powdery mildew resistance locus in barley. (PhD Thesis) Göttingen, Georg-August-Universität (2018) 134 pp.

Li J, Zhou R, Endo T R, Stein N:

High-throughput development of SSR marker candidates and their chromosomal assignment in rye (Secale cereale L.). Plant Breed. 137 (2018) 561-572. https://dx.doi.org/10.1111/pbr.12619

Prade V M, Gundlach H, Twardziok S, Chapman B, Tan C, Langridge P, Schulman A H, Stein N, Waugh R, Zhang G, Platzer M, Li C, Spannagl M, Mayer K F X:

The pseudogenes of barley. Plant J. 93 (2018) 502-514. https://dx.doi.org/10.1111/tpj.13794

Rajaraman J, Douchkov D, Lück S, Hensel G, Nowara D, Pogoda M, Rutten T, Meitzel T, Brassac J, Höfle C, Hückelhoven R, Klinkenberg J, Trujillo M, Bauer E, Schmutzer T, Himmelbach A, Mascher M, Lazzari B, Stein N, Kumlehn J, Schweizer P:

Evolutionarily conserved partial gene duplication in the Triticeae tribe of grasses confers pathogen resistance. Genome Biol. 19 (2018) 116. https://dx.doi.org/10.1186/s13059-018-1472-7

Romero C C T, Vermeulen J P, Vels A, Himmelbach A, Mascher M, Niks R E:

Mapping resistance to powdery mildew in barley reveals a large-effect nonhost resistance QTL. Theor. Appl. Genet. 131 (2018) 1031–1045. https://dx.doi.org/10.1007/s00122-018-3055-0

Roorkiwal M, Jarquin D, Singh M K, Gaur P M, Bharadwaj C, Rathore A, Howard R, Srinivasan S, Jain A, Garg V, Kale S, Chitikineni A, Tripathi S, Jones E, Robbins K R, Crossa J, Varshney R K:

Genomic-enabled prediction models using multi-environment trials to estimate the effect of genotype x environment interaction on prediction accuracy in chickpea. Sci. Rep. 8 (2018) 11701. https://dx.doi.org/10.1038/s41598-018-30027-2

Šarhanová P, Pfanzelt S, Brandt R, Himmelbach A, Blattner F R:

SSR-seq: Genotyping of microsatellites using next-generation sequencing reveals higher level of polymorphism as compared to traditional fragment size scoring. Ecol. Evol. 8 (2018) 10817-10833. https://dx.doi.org/10.1002/ece3.4533

Schreiber M, Stein N, Mascher M:

Genomic approaches for studying crop evolution. Genome Biol. 19 (2018) 140. https://dx.doi.org/10.1186/s13059-018-1528-8

Stein N, Mascher M:

Barley genome sequencing amd assembly - a first version reference sequence. In: Stein N, Muehlbauer G J (Eds.): The Barley Genome, 1st ed. (Series: Kole, C (Ed.): Compendium of Plant Genomes) Cham: Springer (2018) ISBN 978-3-319-92528-8, 57-71. https://dx.doi.org/10.1007/978-3-319-92528-8_5

Stein N, Muehlbauer G J (Eds.):

The Barley Genome, 1st ed. (Series: Kole, C (Ed.): Compendium of Plant Genomes) : Springer International Publishing AG (2018) ISBN 978-3-319-92528-8, XVIII, 394 pp. https://dx.doi.org/10.1007/978-3-319-92528-8

The International Wheat Genome Sequencing Consortium (IWGSC; IPK authors: Mascher M, Zhou, R., Himmelbach, A. & co-corresponding author: Stein, N.):

Shifting the limits in wheat research and breeding using a fully annotated reference genome. Science 361 (2018) eaar7191. https://dx.doi.org/10.1126/science.aar7191

Zeng X, Guo Y, Xu Q, Mascher M, Guo G, Li S, Mao L, Liu Q, Xia Z, Zhou J, Yuan H, Tai S, Wang Y, Wei Z, Song L, Zha S, Li S, Tang Y, Bai L, Zhuang Z, He W, Zhao S, Fang X, Gao Q, Yin Y, Wang J, Yang H, Zhang J, Henry R J, Stein N, Tashi N:

Origin and evolution of qingke barley in Tibet. Nat. Commun. 9 (2018) 5433. https://dx.doi.org/10.1038/s41467-018-07920-5

Avni R, Nave M, Barad O, Baruch K, Twardziok S O, Gundlach H, Hale I, Mascher M, Spannagl M, Wiebe K, Jordan K W, Golan G, Deek J, Ben-Zvi B, Ben-Zvi G, Himmelbach A, MacLachlan R P, Sharpe A G, Fritz A, Ben-David R, Budak H, Fahima T, Korol A, Faris J D, Hernandez A, Mikel M A, Levy A A, Steffenson B, Maccaferri M, Tuberosa R, Cattivelli L, Faccioli P, Ceriotti A, Kashkush K, Pourkheirandish M, Komatsuda T, Eilam T, Sela H, Sharon A, Ohad N, Chamovitz D A, Mayer K F X, Stein N, Ronen G, Peleg Z, Pozniak C J, Akhunov E D, Distelfeld A:

Wild emmer genome architecture and diversity elucidate wheat evolution and domestication. Science 357 (2017) 93-97. https://dx.doi.org/10.1126/science.aan0032

Beier S, Himmelbach A, Colmsee C, Zhang X-Q, Barrero R A, Zhang Q, Li L, Bayer M, Bolser D, Taudien S, Groth M, Felder M, Hastie A, Šimková H, Staňková H, Vrána J, Chan S, Muñoz-Amatriaín M, Ounit R, Wanamaker S, Schmutzer T, Aliyeva-Schnorr L, Grasso S, Tanskanen J, Sampath D, Heavens D, Cao S, Chapman B, Dai F, Han Y, Li H, Li X, Lin C, McCooke J K, Tan C, Wang S, Yin S, Zhou G, Poland J A, Bellgard M I, Houben A, Doležel J, Ayling S, Lonardi S, Langridge P, Muehlbauer G J, Kersey P, Clark M D, Caccamo M, Schulman A H, Platzer M, Close T J, Hansson M, Zhang G, Braumann I, Li C, Waugh R, Scholz U, Stein N, Mascher M:

Construction of a map-based reference genome sequence for barley, Hordeum vulgare L. Sci. Data 4 (2017) 170044. https://dx.doi.org/10.1038/sdata.2017.44

Braatz J, Harloff H-J, Mascher M, Stein N, Himmelbach A, Jung C:

CRISPR-Cas9 targeted mutagenesis leads to simultaneous modification of different homoeologous gene copies in polyploid oilseed rape (Brassica napus). Plant Physiol. 174 (2017) 935-942. https://dx.doi.org/10.1104/pp.17.00426

Dreissig S, Fuchs J, Himmelbach A, Mascher M, Houben A:

Sequencing of single pollen nuclei reveals meiotic recombination events at megabase resolution and circumvents segregation distortion caused by postmeiotic processes. Front. Plant Sci. 8 (2017) 1620. https://dx.doi.org/10.3389/fpls.2017.01620

Jost M:

Cloning of the plant development regulatory genes MANY NODED DWARF (MND) and LAXATUM-A (LAX-A) by taking advantage of on improved barley genomics infrastructure. 18. Kurt von Rümker-Vorträge. Vortr. Pflanzenzücht. 86 (2017) 51-58.

Ma W, Gabriel T S, Martis M M, Gursinsky T, Schubert V, Vrana J, Dolezel J, Grundlach H, Altschmied L, Scholz U, Himmelbach A, Behrens S E, Banaei-Moghaddam A M, Houben A:

Rye B chromosomes encode a functional Argonaute-like protein with in vitro slicer activities similar to its A chromosome paralog. New Phytol. 213 (2017) 916-928. https://dx.doi.org/10.1111/nph.14110

Mascher M, Gundlach H, Himmelbach A, Beier S, Twardziok S O, Wicker T, Radchuk V, Dockter C, Hedley P E, Russell J, Bayer M, Ramsay L, Liu H, Haberer G, Zhang X-Q, Zhang Q, Barrero R A, Li L, Taudien S, Groth M, Felder M, Hastie A, Šimková H, Staňková H, Vrána J, Chan S, Muñoz-Amatriaín M, Ounit R, Wanamaker S, Bolser D, Colmsee C, Schmutzer T, Aliyeva-Schnorr L, Grasso S, Tanskanen J, Chailyan A, Sampath D, Heavens D, Clissold L, Cao S, Chapman B, Dai F, Han Y, Li H, Li X, Lin C, McCooke J K, Tan C, Wang P, Wang S, Yin S, Zhou G, Poland J A, Bellgard M I, Borisjuk L, Houben A, Doležel J, Ayling S, Lonardi S, Kersey P, Langridge P, Muehlbauer G J, Clark M D, Caccamo M, Schulman A H, Mayer K F X, Platzer M, Close T J, Scholz U, Hansson M, Zhang G, Braumann I, Spannagl M, Li C, Waugh R, Stein N:

A chromosome conformation capture ordered sequence of the barley genome. Nature 544 (2017) 427-433. https://dx.doi.org/10.1038/nature22043

Stoll A, Harpke D, Schütte C, Stefanczyk N, Brandt R, Blattner F R, Quandt D:

Development of microsatellite markers and assembly of the plastid genome in Cistanthe longiscapa (Montiaceae) based on low-coverage whole genome sequencing. PLoS One 12 (2017) e0178402. https://dx.doi.org/10.1371/journal.pone.0178402

Wendler N, Mascher M, Himmelbach A, Bini F, Kumlehn J, Stein N:

A high-density, sequence-enriched genetic map of Hordeum bulbosum and its collinearity to H. vulgare. Plant Genome 10 (2017) https://dx.doi.org/10.3835/plantgenome2017.06.0049

Wicker T, Schulman A H, Tanskanen J, Spannagl M, Twardziok S, Mascher M, Springer N M, Li Q, Waugh R, Li C, Zhang G, Stein N, Mayer K F X, Gundlach H:

The repetitive landscape of the 5100 Mbp barley genome. Mobile DNA 8 (2017) 22. https://dx.doi.org/10.1186/s13100-017-0102-3

Yang P, Habekuß A, Hofinger B J, Kanyuka K, Kilian B, Graner A, Ordon F, Stein N:

Sequence diversification in recessive alleles of two host factor genes suggests adaptive selection for bymovirus resistance in cultivated barley from East Asia. Theor. Appl. Genet. 130 (2017) 331-344. https://dx.doi.org/10.1007/s00122-016-2814-z

Youssef H M, Mascher M, Ayoub M A, Stein N, Kilian B, Schnurbusch T:

Natural diversity of inflorescence architecture traces cryptic domestication genes in barley (Hordeum vulgare L.). Genet. Resour. Crop Evol. 64 (2017) 843-853. https://dx.doi.org/10.1007/s10722-017-0504-6

Aliyeva-Schnorr L, Stein N, Houben A:

Collinearity of homoeologous group 3 chromosomes in the genus Hordeum and Secale cereale as revealed by 3H-derived FISH analysis. Chromosome Res. 24 (2016) 231-242. https://dx.doi.org/10.1007/s10577-016-9518-8

Beier S, Himmelbach A, Schmutzer T, Felder M, Taudien S, Mayer K F X, Platzer M, Stein N, Scholz U, Mascher M:

Multiplex sequencing of bacterial artificial chromosomes for assembling complex plant genomes. Plant Biotechnol. J. 14 (2016) 1511-1522. https://dx.doi.org/10.1111/pbi.12511

Houben A, Karimi Ashtiyani R, Ishii T, Stein N, Kumlehn J:

Generation of haploid plants. (Industrieanmeldung), Veröffentlichung: 03.03.2016, IPK-Nr. 2014/01. EP 14182719.6 (2016).

Huu C N, Kappel C, Keller B, Sicard A, Takebayashi Y, Breuninger H, Nowak M D, Baurle I, Himmelbach A, Burkart M, Ebbing-Lohaus T, Sakakibara H, Altschmied L, Conti E, Lenhard M:

Presence versus absence of CYP734A50 underlies the style-length dimorphism in primroses. eLife 5 (2016) e17956. https://dx.doi.org/10.7554/eLife.17956

Jost M:

Cloning of the plant development regulatory genes MANY NODED DWARF (MND) and LAXATUM-A (LAX-A) by taking advantage of an improved barley genomics infrastructure. (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Institut für Agrar- und Ernährungswissenschaften der Naturwissenschaftlichen Fakultät III (2016) 184 pp.

Jöst M, Hensel G, Kappel C, Druka A, Sicard A, Hohmann U, Beier S, Himmelbach A, Waugh R, Kumlehn J, Stein N, Lenhard M:

The INDETERMINATE DOMAIN protein BROAD LEAF1 limits barley leaf width by restricting lateral proliferation. Curr. Biol. 26 (2016) 903-909. https://dx.doi.org/10.1016/j.cub.2016.01.047

Jost M, Taketa S, Mascher M, Himmelbach A, Yuo T, Shahinnia F, Rutten T, Druka A, Schmutzer T, Steuernagel B, Beier S, Taudien S, Scholz U, Morgante M, Waugh R, Stein N:

A homolog of Blade-On-Petiole 1 and 2 (BOP1/2) controls internode length and homeotic changes of the barley inflorescence. Plant Physiol. 171 (2016) 1113-1127. https://dx.doi.org/10.1104/pp.16.00124

Mascher M, Schuenemann V J, Davidovich U, Marom N, Himmelbach A, Hübner S, Korol A, David M, Reiter E, Riehl S, Schreiber M, Vohr S H, Green R E, Dawson I K, Russell J, Kilian B, Muehlbauer G J, Waugh R, Fahima T, Krause J, Weiss E, Stein N:

Genomic analysis of 6,000-year-old cultivated grain illuminates the domestication history of barley. Nat. Genet. 48 (2016) 1089-1093. https://dx.doi.org/10.1038/ng.3611

Nakamura S, Pourkheirandish M, Morishige H, Kubo Y, Nakamura M, Ichimura K, Seo S, Kanamori H, Wu J, Ando T, Hensel G, Sameri M, Stein N, Sato K, Matsumoto T, Yano M, Komatsuda T:

Mitogen-Activated Protein Kinase 3 regulates seed dormancy in barley. Curr. Biol. 26 (2016) 775-781. https://dx.doi.org/10.1016/j.cub.2016.01.024

Russell J, Mascher M, Dawson I K, Kyriakidis S, Calixto C, Freund F, Bayer M, Milne I, Marshall-Griffiths T, Heinen S, Hofstad A, Sharma R, Himmelbach A, Knauft M, van Zonneveld M, Brown J W, Schmid K, Kilian B, Muehlbauer G J, Stein N, Waugh R:

Exome sequencing of geographically diverse barley landraces and wild relatives gives insights into environmental adaptation. Nat. Genet. 48 (2016) 1024-1030. https://dx.doi.org/10.1038/ng.3612

Wendler N:

Unlocking the secondary gene pool of barley for breeding and research. (PhD Thesis, kumulativ) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Institut für Agrar- und Ernährungswissenschaften der Naturwissenschaftlichen Fakultät III (2016) 111 pp.